Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   J8Y16_RS09810 Genome accession   NZ_CP072766
Coordinates   1898056..1898343 (+) Length   95 a.a.
NCBI ID   WP_000648331.1    Uniprot ID   A0A2A8KZX2
Organism   Bacillus cereus strain BC06     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1893056..1903343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8Y16_RS09790 (J8Y16_09790) - 1894230..1894427 (+) 198 WP_212805064.1 DUF4083 domain-containing protein -
  J8Y16_RS09795 (J8Y16_09795) - 1894459..1894920 (+) 462 WP_000024996.1 NUDIX hydrolase -
  J8Y16_RS09800 (J8Y16_09800) nadE 1894969..1895787 (-) 819 WP_212805065.1 ammonia-dependent NAD(+) synthetase -
  J8Y16_RS09805 (J8Y16_09805) - 1896059..1897939 (+) 1881 WP_212805066.1 ABC transporter permease -
  J8Y16_RS09810 (J8Y16_09810) abrB 1898056..1898343 (+) 288 WP_000648331.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  J8Y16_RS09815 (J8Y16_09815) - 1898618..1899568 (+) 951 WP_212805067.1 serine protease -
  J8Y16_RS09820 (J8Y16_09820) - 1899609..1899917 (-) 309 WP_078984692.1 helix-turn-helix transcriptional regulator -
  J8Y16_RS09825 (J8Y16_09825) - 1900025..1900960 (+) 936 WP_000877933.1 aldo/keto reductase -
  J8Y16_RS09830 (J8Y16_09830) - 1901009..1902184 (+) 1176 WP_062921552.1 MFS transporter -
  J8Y16_RS09835 (J8Y16_09835) - 1902374..1902598 (-) 225 WP_000162606.1 hypothetical protein -
  J8Y16_RS09840 (J8Y16_09840) - 1902683..1903030 (-) 348 WP_000426320.1 DUF4257 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10645.40 Da        Isoelectric Point: 6.3179

>NTDB_id=555405 J8Y16_RS09810 WP_000648331.1 1898056..1898343(+) (abrB) [Bacillus cereus strain BC06]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=555405 J8Y16_RS09810 WP_000648331.1 1898056..1898343(+) (abrB) [Bacillus cereus strain BC06]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516