Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   J8Y16_RS06555 Genome accession   NZ_CP072766
Coordinates   1260451..1260774 (-) Length   107 a.a.
NCBI ID   WP_000578883.1    Uniprot ID   A0A150B540
Organism   Bacillus cereus strain BC06     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1255451..1265774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8Y16_RS06530 (J8Y16_06530) - 1255691..1256977 (+) 1287 WP_071735706.1 D-alanyl-D-alanine carboxypeptidase family protein -
  J8Y16_RS06535 (J8Y16_06535) - 1257172..1257741 (+) 570 WP_000767813.1 signal peptidase I SipW -
  J8Y16_RS06540 (J8Y16_06540) - 1257802..1258389 (+) 588 WP_212804935.1 CalY family protein -
  J8Y16_RS06545 (J8Y16_06545) - 1258551..1259357 (+) 807 WP_017560862.1 DUF4047 domain-containing protein -
  J8Y16_RS06550 (J8Y16_06550) calY 1259782..1260375 (+) 594 WP_000053731.1 biofilm matrix protein CalY -
  J8Y16_RS06555 (J8Y16_06555) sinR 1260451..1260774 (-) 324 WP_000578883.1 helix-turn-helix domain-containing protein Regulator
  J8Y16_RS06560 (J8Y16_06560) - 1260854..1260988 (-) 135 WP_000276217.1 anti-repressor SinI family protein -
  J8Y16_RS06565 (J8Y16_06565) inhA1 1261332..1263719 (+) 2388 WP_212804936.1 M6 family metalloprotease immune inhibitor InhA1 -
  J8Y16_RS06570 (J8Y16_06570) - 1263891..1265258 (+) 1368 WP_000116799.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12358.20 Da        Isoelectric Point: 9.6248

>NTDB_id=555402 J8Y16_RS06555 WP_000578883.1 1260451..1260774(-) (sinR) [Bacillus cereus strain BC06]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKENHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=555402 J8Y16_RS06555 WP_000578883.1 1260451..1260774(-) (sinR) [Bacillus cereus strain BC06]
ATGATTGGAGAACGTATAAAACGCCTTCGCTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTCTACTTCATGATGAAACAACAAAGGAAAATCACTTAGACTCCGAATGGACACAACTCGTT
AAAGATGCGATGAGCTCCGGCGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A150B540

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692