Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   J8Y16_RS00020 Genome accession   NZ_CP072766
Coordinates   3012..4139 (+) Length   375 a.a.
NCBI ID   WP_000470746.1    Uniprot ID   A0A243B7E4
Organism   Bacillus cereus strain BC06     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8Y16_RS00005 (J8Y16_00005) dnaA 1..1341 (+) 1341 WP_000428021.1 chromosomal replication initiator protein DnaA -
  J8Y16_RS00010 (J8Y16_00010) dnaN 1520..2659 (+) 1140 WP_001212527.1 DNA polymerase III subunit beta -
  J8Y16_RS00015 (J8Y16_00015) yaaA 2787..2999 (+) 213 WP_000821367.1 S4 domain-containing protein YaaA -
  J8Y16_RS00020 (J8Y16_00020) recF 3012..4139 (+) 1128 WP_000470746.1 DNA replication/repair protein RecF Machinery gene
  J8Y16_RS00025 (J8Y16_00025) gyrB 4178..6100 (+) 1923 WP_000435986.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  J8Y16_RS00030 (J8Y16_00030) gyrA 6189..8660 (+) 2472 WP_001282857.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43304.63 Da        Isoelectric Point: 6.7809

>NTDB_id=555385 J8Y16_RS00020 WP_000470746.1 3012..4139(+) (recF) [Bacillus cereus strain BC06]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLLGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=555385 J8Y16_RS00020 WP_000470746.1 3012..4139(+) (recF) [Bacillus cereus strain BC06]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAGTTAGAGCTTTCCTTTGAAGATAAAGTAAATGT
AATTATCGGCGAGAATGCGCAAGGGAAAACGAATTTGATGGAAGCTATTTATGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGCGAGCTTATCCGTTGGGATGAAGATTTCGGTCAAATTAAGGGAAAGTTACAAAAGAGAAATAGTTCT
TTGTCTTTGGAATTAAATATCTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAATTGAGTCAATA
TATTGGCGTGATGAATGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGCCAAATAGCTCCGGTCTATTTGTATGAATTGAGTCAATATCAAAAGGTGCTCACACAACGA
AATCACTTGCTGAAAAAGATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTTATCGA
GCATGGTGCAAAAATATTGCAAAAGCGTTTTGAATTTTTGCATTTACTACAAGAATGGGCAGCTCCAATTCATCGCGGTA
TAAGCCGTGGATTAGAAGAATTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTACTTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCTCAAGGACAACAACGAACGACCGCACTGT
CCCTAAAATTAGCTGAAATTGAATTGATTTACTCAGAAGTTAAGGAATATCCGATCCTTTTACTCGATGATGTATTATCA
GAATTAGATGATTATCGTCAATCACATCTGTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTGACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A243B7E4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.576

98.133

0.653