Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   SMUNUM_RS04690 Genome accession   NZ_AP014571
Coordinates   946332..947294 (+) Length   320 a.a.
NCBI ID   WP_002262859.1    Uniprot ID   Q8DUE0
Organism   Streptococcus mutans LP13     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 941332..952294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNUM_RS04665 (SMNUM_0876) dapA 941564..942445 (+) 882 WP_002262854.1 4-hydroxy-tetrahydrodipicolinate synthase -
  SMUNUM_RS04670 (SMNUM_0877) - 942753..943091 (+) 339 WP_002262855.1 ATP cone domain-containing protein -
  SMUNUM_RS04675 (SMNUM_0878) - 943376..944341 (+) 966 WP_002262856.1 hypothetical protein -
  SMUNUM_RS04680 (SMNUM_0879) ylqF 944538..945389 (+) 852 WP_002262857.1 ribosome biogenesis GTPase YlqF -
  SMUNUM_RS04685 (SMNUM_0880) - 945376..946158 (+) 783 WP_002262858.1 ribonuclease HII -
  SMUNUM_RS04690 (SMNUM_0881) ceuB 946332..947294 (+) 963 WP_002262859.1 iron chelate uptake ABC transporter family permease subunit Machinery gene
  SMUNUM_RS04695 (SMNUM_0882) - 947291..948262 (+) 972 WP_002279762.1 iron chelate uptake ABC transporter family permease subunit -
  SMUNUM_RS04700 (SMNUM_0883) - 948259..949065 (+) 807 WP_002270389.1 ATP-binding cassette domain-containing protein -
  SMUNUM_RS04705 (SMNUM_0884) - 949113..950129 (+) 1017 WP_002279761.1 siderophore ABC transporter substrate-binding protein -
  SMUNUM_RS04710 (SMNUM_0885) - 950201..950482 (+) 282 WP_002262863.1 hypothetical protein -
  SMUNUM_RS04715 (SMNUM_0886) dprA 950649..951491 (+) 843 WP_002262865.1 DNA-processing protein DprA Machinery gene

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 34993.26 Da        Isoelectric Point: 9.8764

>NTDB_id=55538 SMUNUM_RS04690 WP_002262859.1 946332..947294(+) (ceuB) [Streptococcus mutans LP13]
MKKVLTVPVLGAAAVFLSLVSIFIGVKSLSLFELGSLDDSQLNILLSSRIPRTVSILIAGSSLAVCGLIMQQLTQNKFVS
PTTAGTMDWAKLGVVVTIILFSKSSLLLQLIISSVFVIFGSLFFIYLLKVIKFKDDVFIPLVGLMLGKVVSAISTFLGVQ
FQILQSVNSWLEGHFSIMTSHRYEILFLVLPCMVLIYLYAHQFTIAGLGEDFSKNLGLNYQFIINLGLVLVSVMTAIIVT
VVGSLPFLGLIVPNSISAIKGDNMKNNLILTSFLGAVIVLICDIFGRLIIFPYEVSIGLTMGIIGSIFFLYFLMKGRRRS

Nucleotide


Download         Length: 963 bp        

>NTDB_id=55538 SMUNUM_RS04690 WP_002262859.1 946332..947294(+) (ceuB) [Streptococcus mutans LP13]
ATGAAAAAAGTACTCACTGTTCCAGTGCTGGGTGCAGCTGCAGTCTTTCTTTCTCTCGTTTCAATATTTATCGGTGTTAA
GAGTCTATCGCTTTTTGAACTGGGCTCTTTAGACGATTCACAACTTAACATTTTATTATCTAGTCGCATTCCTAGAACGG
TTAGTATTTTAATTGCTGGCTCTAGTTTAGCCGTTTGTGGTTTAATTATGCAGCAATTAACGCAAAATAAATTTGTCTCA
CCGACAACGGCTGGGACAATGGATTGGGCAAAGCTAGGTGTTGTTGTCACTATTATCTTATTTAGTAAATCTTCTTTACT
ATTGCAGTTGATTATTTCATCGGTCTTTGTCATTTTTGGTTCTTTGTTTTTTATCTATCTTTTAAAGGTTATTAAATTTA
AGGATGATGTTTTCATTCCTCTAGTAGGTCTGATGTTGGGGAAAGTTGTATCTGCAATCAGTACTTTTTTAGGAGTACAG
TTTCAGATATTGCAGTCTGTAAACAGTTGGTTAGAAGGTCATTTTTCCATCATGACTTCTCATCGATATGAGATTTTATT
TTTGGTGCTGCCTTGCATGGTATTAATTTACCTTTATGCTCATCAGTTTACTATAGCTGGCTTGGGAGAAGATTTTTCTA
AAAATCTAGGTTTGAATTATCAATTTATTATTAATTTAGGCTTGGTTCTTGTTTCGGTTATGACAGCTATCATTGTAACA
GTTGTTGGCAGTCTTCCTTTTTTAGGTTTGATTGTTCCTAATTCGATTTCTGCTATCAAGGGCGATAATATGAAGAACAA
CTTAATATTAACCTCTTTTTTAGGTGCTGTTATTGTGCTTATTTGTGATATTTTTGGACGTCTTATTATTTTTCCATATG
AAGTTTCTATTGGATTGACTATGGGAATAATAGGAAGTATCTTTTTCCTTTATTTTTTAATGAAGGGAAGAAGGCGTTCA
TGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(15-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DUE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

45.768

99.688

0.456

Multiple sequence alignment