Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   L0026_RS01980 Genome accession   NZ_CP090649
Coordinates   428364..429725 (+) Length   453 a.a.
NCBI ID   WP_116818701.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA1609     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 423364..434725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0026_RS01960 (L0026_01960) - 424201..424767 (-) 567 WP_003117889.1 hypothetical protein -
  L0026_RS01965 (L0026_01965) rsmD 424770..425366 (-) 597 WP_247322160.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  L0026_RS01970 (L0026_01970) - 425366..426853 (-) 1488 WP_003102862.1 pitrilysin family protein -
  L0026_RS01975 (L0026_01975) - 426846..428243 (-) 1398 WP_003084498.1 pitrilysin family protein -
  L0026_RS01980 (L0026_01980) pilA 428364..429725 (+) 1362 WP_116818701.1 signal recognition particle-docking protein FtsY Machinery gene
  L0026_RS01985 (L0026_01985) ftsE 429722..430393 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  L0026_RS01990 (L0026_01990) ftsX 430393..431400 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  L0026_RS01995 (L0026_01995) rpoH 431514..432368 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  L0026_RS02000 (L0026_02000) - 432433..433038 (+) 606 WP_003084511.1 hypothetical protein -
  L0026_RS02005 (L0026_02005) mtgA 433043..433774 (-) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  L0026_RS02010 (L0026_02010) - 433811..434188 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  L0026_RS02015 (L0026_02015) thiS 434291..434491 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48253.65 Da        Isoelectric Point: 4.5272

>NTDB_id=555348 L0026_RS01980 WP_116818701.1 428364..429725(+) (pilA) [Pseudomonas aeruginosa strain PA1609]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAPVAEA
PLASDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTSA
SIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQ
VDVAREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFD
AVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALT
KLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=555348 L0026_RS01980 WP_116818701.1 428364..429725(+) (pilA) [Pseudomonas aeruginosa strain PA1609]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCGCCGGTTGCCGAAGCA
CCGCTCGCCAGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCAACCCGAGCCTAT
CCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGCCTCTGGCCG
CCGCTCCGGCAGTCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGACTGTCCAAGACCAGCGCC
AGCATCGGCGAAGGCATGGCCAGCCTGTTCCTCGGCCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACGCG
CCTGCTGACCGCCGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGGAGC
TGGCCGACAGCGGCGCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAG
GTCGACGTCGCGCGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCT
GGCGAAGAAGCTGCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCCGTGGAGCAGT
TGCAGGTCTGGGGCGAGCGCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTCGAC
GCGGTGCAGGCCGCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAACCT
GATGGAGGAGCTGAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGCTCG
ACGCCGGCACCGGGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTGACC
AAACTGGACGGCACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGGTGT
CGGCGAGGGGATCGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCAT
GA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(248-447)

SRP54-type protein, helical bundle domain (SRP54_N)

(163-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

46.804

96.689

0.453