Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   L0025_RS22395 Genome accession   NZ_CP090648
Coordinates   4770898..4771254 (+) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain PA1616     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4765898..4776254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0025_RS22370 (L0025_22370) fabF 4766110..4767354 (+) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -
  L0025_RS22375 (L0025_22375) pabC 4767354..4768169 (+) 816 WP_003110198.1 aminodeoxychorismate lyase -
  L0025_RS22380 (L0025_22380) mltG 4768175..4769224 (+) 1050 WP_003104128.1 endolytic transglycosylase MltG -
  L0025_RS22385 (L0025_22385) tmk 4769253..4769885 (+) 633 WP_003091125.1 dTMP kinase -
  L0025_RS22390 (L0025_22390) - 4769878..4770864 (+) 987 WP_247382996.1 DNA polymerase III subunit delta' -
  L0025_RS22395 (L0025_22395) pilZ 4770898..4771254 (+) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  L0025_RS22400 (L0025_22400) - 4771269..4772045 (+) 777 WP_003091117.1 TatD family hydrolase -
  L0025_RS22405 (L0025_22405) - 4772271..4773404 (-) 1134 WP_010793190.1 aminotransferase class V-fold PLP-dependent enzyme -
  L0025_RS22410 (L0025_22410) - 4773490..4774128 (+) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  L0025_RS22415 (L0025_22415) - 4774278..4775174 (+) 897 WP_003091113.1 radical SAM protein -
  L0025_RS22420 (L0025_22420) - 4775239..4775871 (+) 633 WP_010793189.1 DUF4823 domain-containing protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=555328 L0025_RS22395 WP_003091119.1 4770898..4771254(+) (pilZ) [Pseudomonas aeruginosa strain PA1616]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=555328 L0025_RS22395 WP_003091119.1 4770898..4771254(+) (pilZ) [Pseudomonas aeruginosa strain PA1616]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTCGGCGACGAAGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCTGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449