Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SMUNUM_RS04300 Genome accession   NZ_AP014571
Coordinates   864009..865745 (+) Length   578 a.a.
NCBI ID   WP_019805395.1    Uniprot ID   -
Organism   Streptococcus mutans LP13     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 859009..870745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNUM_RS04285 (SMNUM_0799) dapB 859712..860479 (+) 768 WP_002262893.1 4-hydroxy-tetrahydrodipicolinate reductase -
  SMUNUM_RS04290 (SMNUM_0800) - 860476..861681 (+) 1206 WP_168747523.1 CCA tRNA nucleotidyltransferase -
  SMUNUM_RS04295 (SMNUM_0801) - 861684..863552 (+) 1869 WP_002266716.1 ABC-F family ATP-binding cassette domain-containing protein -
  SMUNUM_RS04300 (SMNUM_0802) rcrP 864009..865745 (+) 1737 WP_019805395.1 ABC transporter ATP-binding protein Regulator
  SMUNUM_RS04305 (SMNUM_0803) rcrQ 865756..867528 (+) 1773 WP_019805396.1 ABC transporter ATP-binding protein Regulator
  SMUNUM_RS04310 (SMNUM_0804) - 867644..868564 (+) 921 WP_002269023.1 AEC family transporter -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65150.03 Da        Isoelectric Point: 9.4954

>NTDB_id=55531 SMUNUM_RS04300 WP_019805395.1 864009..865745(+) (rcrP) [Streptococcus mutans LP13]
MIYIWSYLKKYPKWLLLDILGALLFVVVNLGLPTALARMIDQGITPADKQALYFWAFIMFIIVLLGIVGRITLAYASGRL
TTTMIRDMRNDMYDKLQEYSHHEYKKIGVSSLVTRMTSDAFVLMQFAEMSLRMGIVTPLMMVSSVIMVLVTSPSLAWIVV
FAIPFLILVIYYVAAKTRPLSEKQQNTLDKINQYVRENLTGLRVIRAFARENFQEERFDLKNRGYEKTSNRLFKLTGLTE
ALFVQIIIIMIVAIVWFSLDPLKQGTIKIGDLVAFIEYSFHALFSFLIFANIFTMYPRMAVSSKRIQEVMAMPISIDPNI
NGIKETKSKGYLEFDNVTFAYPGETESPVLHDISFKARPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVRD
YNLKALRQKIGFIPQKALLFTGTIGENLKYGKRDASLAELHSAADIAQAKEFIESRAEKFDSHLAEGGSNLSGGQKQRLS
IARAVVKKPDIYIFDDSFSALDYKTDSLLRQRLKEVTGNSTVLIVAQRVGTIMNADQIIVLDEGEIVGRGSHDELMKSNA
IYREIANSQLNQQSLTQE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=55531 SMUNUM_RS04300 WP_019805395.1 864009..865745(+) (rcrP) [Streptococcus mutans LP13]
ATGATATATATTTGGTCTTATTTAAAAAAATATCCCAAATGGTTACTATTGGACATTCTTGGTGCCCTTTTATTTGTTGT
TGTCAATTTGGGCTTACCGACAGCTCTGGCACGAATGATTGATCAAGGGATCACACCGGCTGATAAACAAGCTCTTTATT
TTTGGGCTTTTATTATGTTTATCATTGTTCTTTTAGGAATAGTCGGGCGTATTACCCTAGCCTATGCTTCTGGCAGATTA
ACCACGACCATGATTCGCGATATGCGCAATGATATGTATGATAAATTGCAAGAGTACTCCCATCACGAATATAAGAAAAT
TGGTGTCTCTTCCTTGGTTACACGTATGACCAGTGACGCCTTTGTACTTATGCAATTTGCAGAAATGTCCTTGCGGATGG
GAATTGTTACCCCCTTGATGATGGTCTCAAGTGTTATTATGGTTTTGGTGACTAGCCCATCTTTGGCTTGGATTGTAGTA
TTTGCTATTCCTTTTTTGATACTGGTGATTTATTATGTTGCGGCAAAAACACGCCCTTTGTCTGAAAAGCAGCAAAATAC
GCTTGACAAGATTAATCAGTACGTTCGTGAAAACTTAACGGGTCTACGTGTTATTCGTGCCTTTGCGCGTGAAAATTTTC
AAGAAGAACGCTTTGACTTAAAAAACAGAGGTTATGAAAAGACTTCTAACAGACTATTTAAATTAACCGGACTCACAGAA
GCCCTATTTGTTCAGATTATTATTATCATGATAGTAGCTATTGTCTGGTTTTCATTAGATCCGCTTAAGCAAGGGACTAT
CAAGATTGGTGATCTGGTTGCTTTTATTGAGTATAGTTTTCATGCTCTCTTTTCTTTTTTAATATTTGCTAATATTTTCA
CTATGTATCCGCGAATGGCTGTATCTAGCAAACGTATCCAAGAGGTAATGGCTATGCCTATTTCCATTGATCCCAATATA
AATGGCATTAAGGAGACTAAATCCAAAGGCTATTTGGAATTTGACAATGTGACCTTTGCCTATCCCGGTGAGACCGAAAG
TCCTGTCTTGCATGATATTTCTTTTAAAGCTAGACCGGGAGAAACGATTGCTTTTATTGGCAGTACAGGTTCAGGAAAGT
CGTCGCTTGTCAATTTGATTCCCCGTTTTTATGATGTAACTTTGGGTCGGATTCTGGTTGATGGTGTGGATGTCCGTGAC
TATAATCTTAAGGCTCTGCGTCAGAAAATTGGTTTTATTCCGCAAAAAGCGCTGCTATTTACTGGAACCATTGGAGAAAA
TCTTAAGTATGGGAAAAGGGATGCTAGTTTGGCTGAACTGCATTCAGCTGCTGATATTGCACAAGCTAAAGAATTCATCG
AAAGTCGAGCTGAGAAATTTGATAGCCACTTAGCAGAAGGCGGCAGCAATCTTTCAGGGGGACAGAAGCAGCGCTTGTCT
ATTGCGCGTGCAGTTGTTAAGAAACCAGATATCTATATTTTTGATGATTCCTTTTCAGCCTTAGATTATAAGACGGATAG
TCTCCTGCGTCAGCGTTTGAAAGAAGTGACAGGCAATTCAACAGTGCTCATTGTAGCCCAACGTGTCGGAACTATTATGA
ATGCTGACCAGATTATTGTACTGGATGAAGGAGAAATTGTTGGTCGCGGCAGCCATGATGAACTCATGAAGTCCAATGCC
ATTTATCGTGAAATTGCCAACTCACAGCTCAATCAGCAAAGTTTAACGCAAGAGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(350-497)

ABC transporter transmembrane region (ABC_membrane)

(17-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.02

95.329

0.372

Multiple sequence alignment