Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   L0025_RS13750 Genome accession   NZ_CP090648
Coordinates   2954798..2956147 (+) Length   449 a.a.
NCBI ID   WP_019396052.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA1616     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2949798..2961147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0025_RS13730 (L0025_13730) - 2950635..2951201 (-) 567 WP_003117889.1 hypothetical protein -
  L0025_RS13735 (L0025_13735) rsmD 2951204..2951800 (-) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  L0025_RS13740 (L0025_13740) - 2951800..2953287 (-) 1488 WP_003102862.1 pitrilysin family protein -
  L0025_RS13745 (L0025_13745) - 2953280..2954677 (-) 1398 WP_003084498.1 pitrilysin family protein -
  L0025_RS13750 (L0025_13750) pilA 2954798..2956147 (+) 1350 WP_019396052.1 signal recognition particle-docking protein FtsY Machinery gene
  L0025_RS13755 (L0025_13755) ftsE 2956144..2956815 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  L0025_RS13760 (L0025_13760) ftsX 2956815..2957822 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  L0025_RS13765 (L0025_13765) rpoH 2957936..2958790 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  L0025_RS13770 (L0025_13770) - 2958855..2959460 (+) 606 WP_003084511.1 hypothetical protein -
  L0025_RS13775 (L0025_13775) mtgA 2959465..2960196 (-) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  L0025_RS13780 (L0025_13780) - 2960233..2960610 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  L0025_RS13785 (L0025_13785) thiS 2960713..2960913 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 47801.19 Da        Isoelectric Point: 4.5795

>NTDB_id=555300 L0025_RS13750 WP_019396052.1 2954798..2956147(+) (pilA) [Pseudomonas aeruginosa strain PA1616]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAPVAEA
PLASDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTSASIGE
GMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVA
REPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQA
AKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALTKLDG
TAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=555300 L0025_RS13750 WP_019396052.1 2954798..2956147(+) (pilA) [Pseudomonas aeruginosa strain PA1616]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCGCCGGTTGCCGAAGCA
CCGCTCGCCAGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCAACCCGAGCCTAT
CCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGCCTCTGGCCGCCGCTCCGGCAG
TCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGACTGTCCAAGACCAGCGCCAGCATCGGCGAA
GGCATGGCCAGCCTGTTCCTCGGCCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACGCGCCTGCTGACCGC
CGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGGAGCTGGCCGACAGCG
GCGCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAGGTCGACGTCGCG
CGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCTGGCGAAGAAGCT
GCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCCGTGGAGCAGTTGCAGGTCTGGG
GCGAGCGCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTCGACGCGGTGCAGGCC
GCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAACCTGATGGAGGAGCT
GAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGCTCGACGCCGGCACCG
GGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTGACCAAACTGGACGGC
ACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGGTGTCGGCGAGGGGAT
CGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(244-443)

SRP54-type protein, helical bundle domain (SRP54_N)

(159-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.529

94.655

0.45