Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   L0024_RS27370 Genome accession   NZ_CP090647
Coordinates   5913610..5914134 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain PA1681     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5908610..5919134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0024_RS27355 (L0024_27350) aroB 5909726..5910832 (-) 1107 WP_028681386.1 3-dehydroquinate synthase -
  L0024_RS27360 (L0024_27355) aroK 5910882..5911400 (-) 519 WP_003095833.1 shikimate kinase AroK -
  L0024_RS27365 (L0024_27360) pilQ 5911412..5913556 (-) 2145 WP_003161249.1 type 4a pilus secretin PilQ Machinery gene
  L0024_RS27370 (L0024_27365) comL/pilP 5913610..5914134 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  L0024_RS27375 (L0024_27370) pilO 5914131..5914754 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  L0024_RS27380 (L0024_27375) pilN 5914751..5915347 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  L0024_RS27385 (L0024_27380) pilM 5915347..5916411 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  L0024_RS27390 (L0024_27385) - 5916596..5919067 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=555224 L0024_RS27370 WP_003095836.1 5913610..5914134(-) (comL/pilP) [Pseudomonas aeruginosa strain PA1681]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=555224 L0024_RS27370 WP_003095836.1 5913610..5914134(-) (comL/pilP) [Pseudomonas aeruginosa strain PA1681]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362