Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   SMUNUM_RS02910 Genome accession   NZ_AP014571
Coordinates   563077..564735 (+) Length   552 a.a.
NCBI ID   WP_002268052.1    Uniprot ID   -
Organism   Streptococcus mutans LP13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 558077..569735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNUM_RS02885 (SMNUM_0525) xseA 559384..560727 (+) 1344 WP_002262108.1 exodeoxyribonuclease VII large subunit -
  SMUNUM_RS02890 (SMNUM_0526) - 560702..560923 (+) 222 WP_002262107.1 exodeoxyribonuclease VII small subunit -
  SMUNUM_RS02895 (SMNUM_0527) - 560920..561789 (+) 870 WP_002262106.1 polyprenyl synthetase family protein -
  SMUNUM_RS02900 (SMNUM_0528) - 561782..562609 (+) 828 WP_002269460.1 TlyA family RNA methyltransferase -
  SMUNUM_RS02905 (SMNUM_0529) - 562596..563060 (+) 465 WP_002264713.1 arginine repressor -
  SMUNUM_RS02910 (SMNUM_0530) recN 563077..564735 (+) 1659 WP_002268052.1 DNA repair protein RecN Machinery gene
  SMUNUM_RS02915 (SMNUM_0531) - 564957..565796 (+) 840 WP_014678148.1 DegV family protein -
  SMUNUM_RS02920 (SMNUM_0532) - 565789..566646 (+) 858 WP_002262101.1 SGNH/GDSL hydrolase family protein -
  SMUNUM_RS02925 (SMNUM_0533) - 566621..567220 (+) 600 WP_002264716.1 YpmS family protein -
  SMUNUM_RS02930 (SMNUM_0534) - 567317..567592 (+) 276 WP_002262099.1 HU family DNA-binding protein -
  SMUNUM_RS02935 - 567685..567822 (-) 138 Protein_540 IS3 family transposase -
  SMUNUM_RS02940 (SMNUM_0535) - 568013..569131 (-) 1119 Protein_541 hypothetical protein -

Sequence

Protein


Download         Length: 552 a.a.        Molecular weight: 62697.09 Da        Isoelectric Point: 5.0581

>NTDB_id=55519 SMUNUM_RS02910 WP_002268052.1 563077..564735(+) (recN) [Streptococcus mutans LP13]
MLLEIAIKNFAIIEEISLNFERGMTVLTGETGAGKSIVIDAMNMMLGSRASIDVIRHGSPKAEIEGFFSVDKNPSLEQLL
ADQGIAFSDELIIRREILQNGRSISRINGQMVNLATLRAVGQYLVDIHGQHDQEELMRPQKHIQLLDEFGDEVFQVSKQH
YQDLFDHYRDLRKRVLNKRKNEQEHQARIEMLEYQIGEIEAANLQSGEDTKLLKQRDKLMNHKLIVDTLTNAYVLLDNED
FSSLTNVRSAMNDLQSLEEYDAEYKDLSNNLSESYYILEDVSKRLETILDHMDFDANTLVKLEARLDVINTITRKYGGSV
DDVLAYFDNISKEYNHLTGNDLAFDDMERELKVLERSLLEAAAQLSQKRHAIAETLSQEIKQELKDLYMDKADFKVVFTK
GKFNREGNETVAFHISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRREDKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
NHGQVLAISHIPQVIAISDYQYFIEKQSSKATTVSTVRLLNQEERIEEIAKMLAGDNVTQAARQQAKELLKK

Nucleotide


Download         Length: 1659 bp        

>NTDB_id=55519 SMUNUM_RS02910 WP_002268052.1 563077..564735(+) (recN) [Streptococcus mutans LP13]
ATGCTTTTAGAAATTGCCATTAAAAATTTTGCTATTATTGAAGAAATCTCACTCAATTTTGAAAGGGGAATGACTGTTCT
GACCGGTGAAACAGGTGCAGGGAAGTCTATTGTCATTGATGCCATGAATATGATGCTAGGCAGTAGAGCCAGCATAGATG
TCATTCGTCATGGTAGTCCTAAAGCAGAGATTGAGGGTTTTTTCTCTGTGGATAAAAATCCTTCTTTAGAGCAGTTACTG
GCTGATCAGGGAATTGCTTTTTCAGATGAGCTAATCATTCGCCGTGAGATTTTACAAAATGGTCGCAGTATTAGTCGTAT
CAATGGTCAAATGGTTAATCTGGCAACTCTGCGTGCCGTTGGGCAGTATTTAGTTGATATTCATGGACAGCATGATCAAG
AAGAACTGATGCGGCCGCAAAAGCATATTCAGTTGTTGGATGAATTTGGTGATGAGGTATTTCAGGTAAGCAAGCAGCAT
TATCAGGACTTATTTGACCACTATCGGGACTTACGTAAGCGCGTCTTGAATAAACGTAAGAATGAGCAAGAACATCAAGC
ACGTATTGAAATGCTGGAGTATCAGATAGGAGAGATTGAAGCAGCAAACTTACAATCTGGTGAGGATACCAAGCTCTTAA
AACAACGTGATAAACTTATGAATCATAAGCTTATTGTTGATACCTTAACCAATGCTTATGTTTTACTTGATAATGAAGAT
TTTTCGAGTTTGACCAATGTTCGTTCAGCTATGAATGATTTGCAGAGTTTGGAAGAATATGATGCTGAGTACAAGGATTT
GTCCAATAATCTCAGCGAATCTTACTATATTTTAGAAGATGTTAGCAAACGTCTAGAGACCATACTGGATCATATGGATT
TTGATGCCAATACTTTGGTTAAACTTGAAGCACGTCTTGATGTTATCAACACCATCACGCGTAAGTATGGTGGTTCAGTT
GATGATGTTTTGGCTTATTTTGACAATATCAGTAAGGAATACAATCATTTGACAGGAAATGACCTCGCTTTTGATGATAT
GGAAAGAGAACTAAAAGTTTTAGAGCGCTCACTATTAGAAGCAGCAGCTCAATTGAGTCAAAAACGCCATGCCATTGCGG
AAACCTTGTCTCAGGAGATTAAGCAGGAACTAAAAGATCTCTACATGGATAAGGCTGATTTTAAAGTTGTTTTTACTAAA
GGAAAATTTAATCGCGAGGGAAATGAAACAGTCGCTTTTCATATTTCGACTAATCCTGGCGAAGACTTTAAGCCTTTGGT
CAAAGTCGCTTCTGGTGGAGAGCTGTCTCGTCTCATGTTAGCCATTAAGTCAGCTTTTTCACGTCGTGAAGATAAGACTA
GCATTGTTTTTGATGAAGTTGATACAGGTGTTTCAGGACGTGTCGCGCAGGCTATTGCTCAAAAAATTTACAAAATAGGC
AATCACGGTCAAGTTTTAGCTATCTCCCATATCCCGCAAGTCATTGCCATCAGTGATTATCAGTACTTTATTGAAAAACA
AAGCAGCAAAGCCACAACTGTCTCAACGGTTCGCCTTTTAAATCAAGAGGAAAGAATTGAAGAAATCGCTAAGATGTTGG
CAGGGGATAATGTGACCCAAGCTGCGCGCCAGCAAGCTAAAGAACTATTAAAAAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.707

100

0.44

Multiple sequence alignment