Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   J8I93_RS21400 Genome accession   NZ_CP072689
Coordinates   4503422..4504942 (+) Length   506 a.a.
NCBI ID   WP_000059010.1    Uniprot ID   A0A7U9H4L6
Organism   Escherichia marmotae strain YF8     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4498422..4509942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8I93_RS21375 (J8I93_21145) ilvE 4499978..4500907 (-) 930 WP_001517411.1 branched-chain-amino-acid transaminase -
  J8I93_RS21380 (J8I93_21150) ilvM 4500927..4501190 (-) 264 WP_000983255.1 acetolactate synthase 2 small subunit -
  J8I93_RS21385 (J8I93_21155) ilvG 4501187..4502833 (-) 1647 WP_001012639.1 acetolactate synthase 2 catalytic subunit -
  J8I93_RS21390 (J8I93_21160) ilvX 4502836..4502886 (-) 51 WP_001387183.1 peptide IlvX -
  J8I93_RS21395 (J8I93_21165) ilvL 4502973..4503071 (-) 99 WP_001311244.1 ilv operon leader peptide -
  J8I93_RS21400 (J8I93_21170) comM 4503422..4504942 (+) 1521 WP_000059010.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  J8I93_RS21405 (J8I93_21175) maoP 4504968..4505306 (-) 339 WP_000841001.1 macrodomain Ori organization protein MaoP -
  J8I93_RS21410 (J8I93_21180) hdfR 4505425..4506264 (+) 840 WP_000379233.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55213.32 Da        Isoelectric Point: 7.1992

>NTDB_id=555170 J8I93_RS21400 WP_000059010.1 4503422..4504942(+) (comM) [Escherichia marmotae strain YF8]
MSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPSKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTANKLDEYELVGELALTGALRGVPGAISSATEAIKSGRKIIVAKDNEAEVGLINGEGCLIADHL
QAVCAFLEGKHALERPKPTDAESWVLQHDLSDVVGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNE
EALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKAVVLG
ENSATVKQRVIAARERQFKRQNKLNAWLDSPEIRQFCKLESEDAQWLEETLIHLGLSIRAWQRLLKVSRTIADIDQSETI
TRPHLQEAVSYRAIDRLLIHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=555170 J8I93_RS21400 WP_000059010.1 4503422..4504942(+) (comM) [Escherichia marmotae strain YF8]
ATGTCACTGTCAATTGTTCATACCCGTGCCGCGCTGGGAGTAAACGCTCCGCCGATCACTGTTGAGGTACATATCAGTAA
AGGTCTACCCGGATTAACGATGGTGGGCTTACCAGAAACAACGGTAAAAGAAGCACGCGATCGCGTGCGTAGCGCCATTA
TCAATAGCGGATATGAATATCCGTCGAAAAAAATCACCATAAATCTTGCGCCTGCCGATCTACCGAAAGAAGGTGGAAGA
TATGATTTACCTATCGCCATTGCGTTGCTGGCTGCCTCTGAACAGCTTACAGCCAATAAGTTGGATGAATATGAATTAGT
TGGGGAACTGGCGCTTACAGGCGCTTTGCGTGGCGTTCCCGGCGCAATCTCCAGTGCAACTGAAGCTATTAAGTCGGGCA
GAAAGATTATCGTCGCGAAAGACAATGAAGCGGAAGTAGGGCTAATTAACGGTGAAGGATGCCTGATAGCCGATCATCTA
CAAGCGGTCTGTGCATTTCTGGAAGGTAAACATGCTCTCGAACGCCCAAAACCAACAGATGCGGAATCCTGGGTATTACA
ACATGATCTCAGTGATGTTGTCGGTCAGGAGCAAGGAAAGCGAGGGCTGGAAATTACCGCCGCTGGCGGGCACAACCTTT
TACTGATTGGGCCGCCGGGAACGGGTAAAACAATGCTCGCCAGCCGTATTAATGGTCTGTTGCCAGATTTAAGTAATGAA
GAGGCACTGGAGAGTGCTGCGATATTAAGTCTGGTAAATGCCGAATCGGTACAAAAACAGTGGCGGCAACGCCCGTTCCG
TTCACCACATCACAGTGCGTCGTTAACTGCGATGGTTGGCGGTGGTGCAATTCCCGGGCCTGGTGAAATTTCGCTGGCGC
ATAACGGCGTGCTTTTTCTTGATGAGCTACCTGAATTTGAACGGCGTACATTGGATGCCTTGCGGGAGCCCATAGAGTCA
GGCCAGATCCATCTTTCACGCACGCGAGCGAAAATAACCTATCCGGCACGTTTCCAGCTTGTCGCGGCGATGAATCCCAG
CCCTACCGGACATTATCAGGGGAACCATAACCGCTGTACGCCAGAACAAACATTACGTTATCTCAACCGACTCTCAGGTC
CCTTTCTCGACCGCTTTGATCTCTCACTGGAGATCCCTCTCCCACCGCCCGGTATTCTGAGTAAAGCGGTAGTTCTGGGG
GAAAACAGCGCCACCGTTAAACAACGCGTAATAGCTGCCAGAGAGCGCCAATTTAAGCGGCAGAATAAACTGAATGCCTG
GCTGGATAGCCCAGAAATACGACAATTCTGCAAGCTTGAGAGTGAAGACGCACAGTGGCTGGAAGAAACGCTGATCCATC
TGGGATTATCTATTCGTGCCTGGCAGCGGTTACTGAAAGTATCAAGAACCATTGCGGATATTGATCAGTCTGAGACCATC
ACACGCCCGCATCTGCAGGAGGCGGTTAGCTATCGAGCTATCGACCGCTTGTTAATCCATTTGCAAAAACTACTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U9H4L6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.939

100

0.593
  comM Glaesserella parasuis strain SC1401

58.383

100

0.585
  comM Vibrio cholerae strain A1552

58.765

99.209

0.583
  comM Vibrio campbellii strain DS40M4

57.57

99.209

0.571
  comM Legionella pneumophila str. Paris

48.795

98.419

0.48
  comM Legionella pneumophila strain ERS1305867

48.795

98.419

0.48
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.135

99.407

0.439