Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   LZG50_RS06325 Genome accession   NZ_CP090611
Coordinates   1313299..1315302 (-) Length   667 a.a.
NCBI ID   WP_000087285.1    Uniprot ID   A0A0H3EM26
Organism   Escherichia coli isolate DCE7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1308299..1320302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZG50_RS06310 (LZG50_06310) aegA 1309431..1311410 (+) 1980 WP_001078896.1 formate-dependent uric acid utilization protein AegA -
  LZG50_RS06315 (LZG50_06315) nudK 1311478..1312053 (+) 576 WP_001296284.1 GDP-mannose pyrophosphatase NudK -
  LZG50_RS06320 (LZG50_06320) ypfG 1312179..1313222 (+) 1044 WP_001270496.1 DUF1176 domain-containing protein -
  LZG50_RS06325 (LZG50_06325) recP/tkt 1313299..1315302 (-) 2004 WP_000087285.1 transketolase Machinery gene
  LZG50_RS06330 (LZG50_06330) tal 1315322..1316272 (-) 951 WP_001003720.1 transaldolase -
  LZG50_RS06335 (LZG50_06335) maeB 1316561..1318840 (+) 2280 WP_097757113.1 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase -
  LZG50_RS06340 (LZG50_06340) eutS 1319133..1319468 (+) 336 WP_000356956.1 ethanolamine utilization microcompartment protein EutS -
  LZG50_RS06345 (LZG50_06345) eutP 1319481..1319960 (+) 480 WP_000820789.1 ethanolamine utilization acetate kinase EutP -

Sequence

Protein


Download         Length: 667 a.a.        Molecular weight: 73057.78 Da        Isoelectric Point: 6.3824

>NTDB_id=555099 LZG50_RS06325 WP_000087285.1 1313299..1315302(-) (recP/tkt) [Escherichia coli isolate DCE7]
MSRKDLANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWNDFLKHNPTDPTWYDRDRFILSNGHASMLLYSLLHLTGYD
LPLEELKNFRQLHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNQPDHEIVDHFTYVFMGDGCLMEG
ISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWFTDDTAKRFEAYHWHVIHEIDGHDPQAVKEAILEAQSVKDKPSLI
ICRTVIGFGSPNKAGKEEAHGAPLGEEEVALARQKLGWHHPPFEIPKEIYHAWDAREKGEKAQQSWNEKFAAYKKAHPQL
AEEFTRRMSGGLPKDWEKTTQKYINELQANPAKIATRKASQNTLNAYGPMLPELLGGSADLAPSNLTIWKGSVSLKEDPA
GNYIHYGVREFGMTAIANGIAHHGGFVPYTATFLMFVEYARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQAVEQLAS
LRLTPNFSTWRPCDQVEAAVGWKLAVERHNGPTALILSRQNLAQVERTPDQVKEIARGGYVLKDSGGKPDIILIATGSEM
EITLQAAEKLAGEGRNVRVVSLPSTDIFDAQDEKYRESVLPSNVSARVAVEAGIADYWYKYVGLKGAIVGMTGYGESAPA
DKLFPFFGFTAENIVAKAHKVLGVKGA

Nucleotide


Download         Length: 2004 bp        

>NTDB_id=555099 LZG50_RS06325 WP_000087285.1 1313299..1315302(-) (recP/tkt) [Escherichia coli isolate DCE7]
ATGTCCCGAAAAGACCTTGCCAATGCGATTCGCGCACTCAGTATGGATGCGGTACAAAAAGCCAATTCTGGTCATCCCGG
CGCGCCGATGGGCATGGCTGATATTGCCGAAGTGCTGTGGAACGATTTTCTTAAACATAACCCCACCGACCCAACCTGGT
ATGACCGTGACCGCTTTATTCTTTCCAACGGTCACGCGTCGATGCTGCTCTACAGTTTGCTGCATCTGACCGGTTACGAC
CTGCCGCTGGAAGAGCTGAAGAACTTCCGTCAGTTGCATTCGAAAACCCCTGGTCACCCGGAAATCGGCTATACGCCAGG
TGTTGAAACCACCACCGGTCCTCTTGGACAAGGTTTGGCAAACGCCGTCGGGCTGGCGATAGCAGAGCGTACGCTGGCGG
CGCAATTTAATCAGCCGGATCATGAAATTGTCGATCACTTCACCTATGTGTTTATGGGCGACGGCTGCCTGATGGAAGGT
ATCTCTCACGAAGTCTGTTCGCTGGCAGGCACGCTGGGGCTGGGCAAGCTGATTGGTTTTTACGATCACAACGGTATTTC
TATTGATGGGGAAACCGAAGGCTGGTTTACCGACGATACCGCAAAACGATTTGAAGCCTATCACTGGCATGTGATCCACG
AGATCGACGGTCACGATCCACAGGCGGTGAAGGAAGCGATCCTTGAAGCGCAAAGCGTGAAAGATAAGCCGTCGCTGATT
ATCTGCCGTACGGTGATTGGCTTTGGTTCGCCGAATAAAGCAGGTAAGGAAGAGGCGCACGGCGCACCACTGGGGGAAGA
AGAAGTGGCGCTGGCACGGCAAAAACTGGGCTGGCACCATCCGCCATTTGAGATCCCTAAAGAGATTTATCACGCCTGGG
ATGCCCGCGAAAAAGGCGAAAAAGCGCAGCAGAGCTGGAATGAGAAGTTTGCCGCCTATAAAAAGGCTCATCCGCAACTG
GCAGAAGAGTTTACCCGTCGGATGAGCGGCGGTTTGCCGAAGGACTGGGAGAAAACGACTCAGAAATATATCAATGAGTT
GCAGGCGAATCCGGCGAAAATCGCTACCCGTAAGGCTTCGCAAAATACGCTTAACGCTTACGGGCCGATGCTGCCTGAGT
TGCTCGGCGGTTCGGCGGATCTGGCTCCCAGCAACCTCACCATCTGGAAAGGTTCTGTTTCGCTGAAGGAAGATCCGGCG
GGCAACTACATTCACTACGGGGTGCGTGAATTTGGTATGACCGCCATCGCCAACGGCATCGCGCACCACGGTGGCTTTGT
GCCGTATACCGCGACGTTCCTGATGTTTGTTGAATACGCCCGTAACGCCGCGCGGATGGCGGCACTGATGAAAGCGCGGC
AGATTATGGTTTATACCCACGACTCAATTGGTCTGGGCGAAGATGGTCCGACGCACCAGGCTGTTGAGCAACTGGCTAGT
CTGCGCTTAACGCCAAATTTCAGCACCTGGCGACCGTGCGATCAGGTGGAAGCGGCGGTTGGCTGGAAGCTGGCGGTTGA
GCGCCACAACGGACCGACAGCACTGATCCTCTCCAGGCAGAATCTGGCACAGGTAGAACGAACACCGGATCAGGTTAAAG
AGATTGCTCGTGGCGGTTATGTGCTGAAAGACAGCGGCGGTAAGCCAGATATTATTCTGATTGCCACCGGTTCAGAGATG
GAAATCACCCTGCAAGCGGCAGAGAAATTAGCGGGAGAAGGTCGCAATGTTCGCGTGGTTTCCCTGCCCTCGACCGATAT
TTTCGATGCCCAGGATGAGAAATATCGGGAGTCGGTACTGCCTTCAAATGTTTCTGCCCGCGTGGCAGTAGAAGCGGGTA
TTGCCGATTACTGGTACAAATATGTTGGCCTGAAAGGGGCAATTGTCGGGATGACAGGTTATGGGGAATCAGCTCCGGCG
GATAAGCTGTTCCCGTTCTTTGGCTTTACCGCCGAGAATATTGTGGCAAAAGCGCATAAAGTACTGGGAGTGAAAGGTGC
CTGA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(539-654)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(3-333)

Transketolase, pyrimidine binding domain (Transket_pyr)

(353-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3EM26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

47.496

98.801

0.469