Detailed information NTG0555042

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: J8Z27_RS13065
• Genome accession: NZ_CP072680
• Coordinates: 2798428..2799411 (-)
• Length: 327 a.a.
• NCBI ID: WP_239837826.1
• Uniprot ID: A0A9Q8XGC0
• Organism: Vibrio sp. SCSIO 43186
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2793428..2804411

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J8Z27_RS13040 (J8Z27_12960)	rimM	2793543..2794091 (-)	549	WP_252035363.1	ribosome maturation factor RimM	-
J8Z27_RS13045 (J8Z27_12965)	rpsP	2794121..2794369 (-)	249	WP_005438039.1	30S ribosomal protein S16	-
J8Z27_RS13050 (J8Z27_12970)	ffh	2794577..2795956 (-)	1380	WP_239876864.1	signal recognition particle protein	-
J8Z27_RS13055 (J8Z27_12975)	-	2796165..2796959 (+)	795	WP_239837824.1	inner membrane protein YpjD	-
J8Z27_RS13060 (J8Z27_12980)	-	2797082..2798356 (+)	1275	WP_252035364.1	CNNM domain-containing protein	-
J8Z27_RS13065 (J8Z27_12985)	rpoS	2798428..2799411 (-)	984	WP_239837826.1	RNA polymerase sigma factor RpoS	Regulator
J8Z27_RS13070 (J8Z27_12990)	nlpD	2799478..2800389 (-)	912	WP_252035365.1	murein hydrolase activator NlpD	-
J8Z27_RS13075 (J8Z27_12995)	-	2800392..2801018 (-)	627	WP_239865274.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
J8Z27_RS13080 (J8Z27_13000)	surE	2801021..2801779 (-)	759	WP_252035366.1	5'/3'-nucleotidase SurE	-
J8Z27_RS13085 (J8Z27_13005)	truD	2801776..2802822 (-)	1047	WP_252035367.1	tRNA pseudouridine(13) synthase TruD	-
J8Z27_RS13090 (J8Z27_13010)	ispF	2802869..2803348 (-)	480	WP_252036649.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
J8Z27_RS13095 (J8Z27_13015)	ispD	2803352..2804056 (-)	705	WP_239876863.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
J8Z27_RS13100 (J8Z27_13020)	ftsB	2804059..2804337 (-)	279	WP_239865280.1	cell division protein FtsB	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37395.30 Da
• Isoelectric Point: 4.7232

>NTDB_id=555042 J8Z27_RS13065 WP_239837826.1 2798428..2799411(-) (rpoS) [Vibrio sp. SCSIO 43186]
MSISNAATKVEEFELGPTMESIQASEQTTTNRTQSEDAKEEFDASTKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIASQLDKPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDVNNSDP
EVSTQDDDIKSSLIHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFSINEE

Nucleotide

• Length: 984 bp

>NTDB_id=555042 J8Z27_RS13065 WP_239837826.1 2798428..2799411(-) (rpoS) [Vibrio sp. SCSIO 43186]
ATGAGTATCAGCAATGCAGCAACGAAAGTCGAAGAGTTTGAGCTTGGACCTACAATGGAATCGATTCAAGCAAGCGAACA
GACTACTACCAACCGCACCCAATCTGAGGACGCCAAAGAGGAATTTGACGCTTCCACAAAGAGTCTGGATGCCACCCAAC
TTTACTTAGGGGAAATCGGTTTTTCTCCGCTACTCACCGCAGAAGAAGAAGTGTTGTACGCTCGCCGTGCCTTAAGAGGC
GACGAAGCTGCGCGTAAACGCATGATTGAAAGTAACCTTCGTCTAGTAGTAAAAATATCTCGTCGATATAGCAATCGTGG
TCTTGCCTTACTCGACTTAATCGAAGAGGGCAACCTTGGATTGATCCGAGCGGTTGAGAAGTTTGATCCTGAAAGAGGTT
TCCGATTTTCCACTTACGCCACATGGTGGATTCGTCAGACTATTGAACGCGCCCTGATGAATCAGACTCGTACCATTCGT
TTGCCAATTCATGTTGTCAAAGAACTCAATATTTATTTGCGTACTGCTCGAGAGCTATCACAAAAGCTTGACCATGAACC
AACGGCAGAAGAGATTGCATCACAGCTGGATAAGCCTGTTGACGATGTCAGTAAGATGCTACGCCTCAACGAACGCATTA
GCTCCGTTGATACACCGATTGGTGGTGATGGTGAGAAAGCGCTTCTGGACATTATTCCAGATGTAAATAACTCGGACCCA
GAAGTATCCACTCAAGATGATGATATTAAGTCTTCATTGATCCACTGGTTAGATGAGCTCAATCCGAAGCAGAAAGAAGT
ACTGGCTCGTCGATTTGGACTACTAGGGTATGAACCCTCTACCTTGGAAGAAGTGGGACGAGAAATCAATTTAACTCGTG
AACGCGTTCGCCAGATCCAAGTCGAAGGCTTACGCCGCTTGAGAGAGATCCTGATAAAACAGGGGCTGAATATGGAAAAT
CTATTCAGTATAAACGAAGAGTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

• Sigma-70 region 3 (Sigma70_r3) (168-241)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.988	100	0.85