Detailed information NTG0555033

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: J8Z27_RS07075
• Genome accession: NZ_CP072680
• Coordinates: 1465340..1466764 (-)
• Length: 474 a.a.
• NCBI ID: WP_252036489.1
• Uniprot ID: A0A9Q9CX83
• Organism: Vibrio sp. SCSIO 43186
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1460340..1471764

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J8Z27_RS07055 (J8Z27_06990)	-	1461763..1462968 (+)	1206	WP_252036487.1	HD-GYP domain-containing protein	-
J8Z27_RS07060 (J8Z27_06995)	cdd	1463017..1463904 (-)	888	WP_252036488.1	cytidine deaminase	-
J8Z27_RS07065 (J8Z27_07000)	-	1464154..1464831 (-)	678	WP_239836523.1	CidB/LrgB family autolysis modulator	-
J8Z27_RS07070 (J8Z27_07005)	-	1464831..1465196 (-)	366	WP_239836522.1	CidA/LrgA family protein	-
J8Z27_RS07075 (J8Z27_07010)	sbcB	1465340..1466764 (-)	1425	WP_252036489.1	exodeoxyribonuclease I	Machinery gene
J8Z27_RS07080 (J8Z27_07015)	-	1466904..1468277 (-)	1374	WP_252036490.1	L-cystine transporter	-
J8Z27_RS07085 (J8Z27_07020)	-	1468469..1469155 (-)	687	WP_252036491.1	NAD(P)H-binding protein	-
J8Z27_RS07090 (J8Z27_07025)	-	1469686..1470297 (+)	612	WP_239875700.1	flavin reductase family protein	-
J8Z27_RS07095 (J8Z27_07030)	cobT	1470304..1471332 (+)	1029	WP_252036492.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54898.26 Da
• Isoelectric Point: 4.9135

>NTDB_id=555033 J8Z27_RS07075 WP_252036489.1 1465340..1466764(-) (sbcB) [Vibrio sp. SCSIO 43186]
MQREHQPTFFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPSDYLPSPEAALITGITPQVAESKGLPEP
EFIAKIHEQLSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACYALRPEGINWPENEEGFI
SFKLEHLSVANGIEHANAHDAMADVIATIEMAKKVKAAQPKLFDYFLSMRHKRKLNDLVDIVKMTPLMHVSGMLGRECNY
TSWVVPVAWHPTNQNAVIVVDLAKDPQPLLDLDVEQLNERLYTKHSELGPDELPVPIKLVHLNKCPILAPAKTLTAENAA
NIGIDREKCLQNLERLRQRPEIREKLNSLYSIEREYEKNDDVDTMLYDGFFSPADKTSMAIIRETDPENLSALDISFNDE
RIAPLLFRYRARHFPWTLDESEQQKWAAHCREYFESRIEDYMLNLENLVHEYESDEKKIAILKSVYQYVQKRVS

Nucleotide

• Length: 1425 bp

>NTDB_id=555033 J8Z27_RS07075 WP_252036489.1 1465340..1466764(-) (sbcB) [Vibrio sp. SCSIO 43186]
ATGCAACGAGAGCATCAACCTACGTTTTTTTTCTTCGATTATGAGACGTGGGGAACCAGCCCAGCAAAAGACAGACCGTC
TCAGTTTGCGGGAGTACGTACCGATATGGACTTCAATATCATAGGTGAACCTCTTGTTATCTACTGCCAACCGCCCTCAG
ATTATCTTCCTTCACCAGAAGCTGCGCTGATCACAGGTATTACACCTCAAGTTGCGGAATCGAAAGGCCTGCCAGAGCCT
GAGTTTATCGCCAAAATTCATGAGCAATTATCCACCCCCAACACCATCAACTTAGGTTACAACAGCATTCGATTTGATGA
CGAAGTGACTCGATACACCTGTTACCGGAATTTCATCGATCCATATGCGTGGAGCTGGCAAAACGGCAACTCTCGCTGGG
ACTTACTTGATGTGATGAGAGCTTGTTATGCTCTTCGCCCAGAAGGCATCAATTGGCCAGAAAATGAAGAAGGCTTCATC
AGTTTTAAGCTGGAACACTTATCCGTTGCAAATGGCATTGAACACGCGAATGCACACGATGCGATGGCCGATGTTATCGC
CACCATTGAGATGGCGAAAAAGGTCAAAGCTGCGCAACCAAAGCTTTTCGATTACTTCCTGAGTATGCGCCACAAGCGTA
AACTCAATGATCTTGTCGATATCGTAAAGATGACACCGCTTATGCACGTATCGGGTATGTTGGGGCGTGAATGCAATTAT
ACTAGCTGGGTAGTTCCGGTCGCTTGGCACCCAACCAATCAAAACGCAGTCATTGTGGTTGATTTGGCGAAAGATCCTCA
GCCGTTGTTGGATTTAGATGTAGAACAGCTTAATGAGCGTCTCTACACCAAACATTCTGAACTTGGCCCAGACGAACTGC
CTGTACCAATCAAACTTGTCCACCTCAACAAGTGCCCTATTTTGGCCCCAGCCAAAACATTAACTGCTGAGAATGCAGCT
AACATAGGCATTGACAGAGAAAAGTGCTTACAAAACCTTGAGCGACTTAGACAACGCCCAGAAATAAGAGAAAAACTCAA
TTCGCTATACAGTATCGAACGAGAATACGAAAAGAACGATGATGTCGATACCATGCTTTACGATGGTTTTTTCTCTCCAG
CTGATAAAACATCAATGGCAATAATCCGCGAAACGGATCCGGAGAATCTATCCGCTCTAGATATCTCATTCAATGATGAG
CGAATAGCCCCACTTTTATTCCGCTATCGCGCCAGACATTTTCCGTGGACATTGGACGAGAGTGAGCAACAAAAATGGGC
GGCACATTGCCGTGAGTACTTTGAAAGCCGAATTGAAGATTACATGTTGAATTTGGAAAACTTAGTTCACGAGTATGAAA
GTGACGAAAAAAAGATAGCTATCTTAAAATCTGTTTACCAATACGTCCAAAAGCGAGTATCTTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-190)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	78.769	99.367	0.783