Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LQQ45_RS10670 Genome accession   NZ_CP090607
Coordinates   2056052..2056687 (+) Length   211 a.a.
NCBI ID   WP_000264036.1    Uniprot ID   A0A7U3Y6I5
Organism   Acinetobacter baumannii strain MRSN 58     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2051052..2061687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQQ45_RS10645 (LQQ45_10645) - 2051892..2052905 (+) 1014 WP_001096103.1 aminoglycoside phosphotransferase family protein -
  LQQ45_RS10650 (LQQ45_10650) murU 2052905..2053594 (+) 690 WP_000646460.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  LQQ45_RS10655 (LQQ45_10655) rsmG 2053682..2054314 (+) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  LQQ45_RS10660 (LQQ45_10660) - 2054336..2055118 (+) 783 WP_000057212.1 ParA family protein -
  LQQ45_RS10665 (LQQ45_10665) - 2055115..2056002 (+) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  LQQ45_RS10670 (LQQ45_10670) exbB 2056052..2056687 (+) 636 WP_000264036.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LQQ45_RS10675 (LQQ45_10675) - 2056703..2057131 (+) 429 WP_000669684.1 biopolymer transporter ExbD -
  LQQ45_RS10680 (LQQ45_10680) msbA 2057128..2058855 (+) 1728 WP_001070729.1 lipid A export permease/ATP-binding protein MsbA -
  LQQ45_RS10685 (LQQ45_10685) lpxK 2058858..2059868 (+) 1011 WP_000050479.1 tetraacyldisaccharide 4'-kinase -
  LQQ45_RS10690 (LQQ45_10690) kdsB 2059878..2060639 (+) 762 WP_000680692.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LQQ45_RS10695 (LQQ45_10695) - 2060651..2061631 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23212.13 Da        Isoelectric Point: 6.4861

>NTDB_id=555025 LQQ45_RS10670 WP_000264036.1 2056052..2056687(+) (exbB) [Acinetobacter baumannii strain MRSN 58]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSIMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=555025 LQQ45_RS10670 WP_000264036.1 2056052..2056687(+) (exbB) [Acinetobacter baumannii strain MRSN 58]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATCTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCGACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAATCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U3Y6I5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393