Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   VPBB_RS12390 Genome accession   NC_019955
Coordinates   2722730..2723836 (-) Length   368 a.a.
NCBI ID   WP_005461714.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus BB22OP     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2717730..2728836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VPBB_RS12360 (VPBB_2428) - 2718384..2718881 (+) 498 WP_015297290.1 SprT family zinc-dependent metalloprotease -
  VPBB_RS12365 (VPBB_2429) endA 2719001..2719696 (+) 696 WP_005493878.1 deoxyribonuclease I -
  VPBB_RS12370 (VPBB_2430) rsmE 2719821..2720552 (+) 732 WP_005461719.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  VPBB_RS12375 (VPBB_2431) gshB 2720567..2721517 (+) 951 WP_005425823.1 glutathione synthase -
  VPBB_RS12380 (VPBB_2432) - 2721631..2722194 (+) 564 WP_015297291.1 YqgE/AlgH family protein -
  VPBB_RS12385 (VPBB_2433) ruvX 2722243..2722668 (+) 426 WP_005461715.1 Holliday junction resolvase RuvX -
  VPBB_RS12390 (VPBB_2434) pilU 2722730..2723836 (-) 1107 WP_005461714.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  VPBB_RS12395 (VPBB_2435) pilT 2723867..2724907 (-) 1041 WP_005461712.1 type IV pilus twitching motility protein PilT Machinery gene
  VPBB_RS12400 (VPBB_2436) - 2724936..2725649 (+) 714 WP_015297293.1 YggS family pyridoxal phosphate-dependent enzyme -
  VPBB_RS12405 (VPBB_2437) proC 2725769..2726587 (+) 819 WP_005482485.1 pyrroline-5-carboxylate reductase -
  VPBB_RS12410 (VPBB_2438) - 2726640..2727197 (+) 558 WP_005482440.1 YggT family protein -
  VPBB_RS12415 (VPBB_2439) yggU 2727197..2727487 (+) 291 WP_005482461.1 DUF167 family protein YggU -
  VPBB_RS12420 (VPBB_2440) - 2727615..2728046 (+) 432 WP_005461703.1 DUF4426 domain-containing protein -
  VPBB_RS12425 (VPBB_2441) - 2728164..2728766 (+) 603 WP_015297295.1 XTP/dITP diphosphatase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41415.65 Da        Isoelectric Point: 7.0235

>NTDB_id=55500 VPBB_RS12390 WP_005461714.1 2722730..2723836(-) (pilU) [Vibrio parahaemolyticus BB22OP]
MDLNKFLEGMLTLKASDLYITVGAPILFRVDGELRPQGEKLTEHDVAKLLDSAMDPDRRQEFRKSRESNFAIVRDCGRFR
VSAFFQRELPGAVIRRIETIIPTFEQLKLPLVLQDLAIAKRGLVLVVGATGSGKSTTMAAMTGYRNSNKTGHILTVEDPI
EFVHEHKRCIVTQREVGLDTESYEVALKNSLRQAPDMILIGEIRSRETMEYAMTFAETGHLCMATLHANNANQALERILH
LVPKDQKEQFLFDLSMNLKGVIGQQLIRDKNGQGRHGVFEILLNSPRVSDLIRRGDLHELKSTMARSNEFGMLTFDQSLY
KLVMQGKISEEDALHSADSANDLRLMLKTQRGEPFSTGSLANVKIDMD

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=55500 VPBB_RS12390 WP_005461714.1 2722730..2723836(-) (pilU) [Vibrio parahaemolyticus BB22OP]
ATGGATCTGAATAAATTTCTTGAAGGTATGTTGACGCTAAAAGCGTCGGATCTTTACATCACGGTTGGTGCGCCAATTCT
ATTTCGTGTGGATGGCGAATTGCGTCCGCAAGGGGAGAAACTCACCGAACATGATGTTGCAAAGTTGCTTGATAGCGCAA
TGGATCCGGATCGGCGTCAGGAGTTTCGCAAAAGCCGCGAATCAAACTTTGCTATCGTCAGAGATTGTGGTCGCTTCCGT
GTTAGTGCTTTTTTTCAGCGAGAACTGCCGGGAGCAGTCATTCGCCGTATCGAAACCATCATTCCTACTTTTGAGCAGTT
AAAACTGCCTTTAGTGCTGCAAGACTTAGCGATTGCCAAGCGTGGTTTGGTGCTGGTGGTCGGCGCGACTGGCTCGGGTA
AATCGACCACGATGGCGGCGATGACGGGCTATCGAAACAGCAACAAAACCGGTCACATCTTGACGGTCGAAGATCCGATC
GAATTTGTGCATGAGCATAAGCGTTGTATCGTGACTCAGCGTGAAGTGGGTTTGGATACCGAAAGCTATGAAGTCGCACT
GAAAAACTCGCTGCGCCAAGCGCCAGATATGATTTTGATTGGTGAGATCCGTAGCCGAGAAACGATGGAATACGCGATGA
CCTTCGCCGAAACGGGTCACTTGTGTATGGCAACGTTGCACGCCAACAACGCCAACCAAGCGTTAGAACGTATTCTCCAT
TTGGTGCCTAAAGATCAAAAAGAGCAATTCTTGTTTGATTTGTCGATGAACCTAAAAGGCGTGATTGGTCAGCAGCTGAT
CCGTGATAAGAATGGTCAAGGGCGTCATGGTGTGTTTGAGATCTTGCTAAACAGCCCACGAGTGTCGGATTTGATCCGTC
GTGGTGATTTACACGAATTGAAATCAACCATGGCACGATCCAATGAGTTTGGCATGCTGACGTTTGACCAATCGCTCTAC
AAGCTGGTGATGCAAGGTAAGATCAGCGAAGAGGATGCACTGCACAGTGCGGATTCTGCCAACGATCTTCGTTTAATGCT
GAAAACACAGCGTGGTGAGCCATTCTCTACAGGTAGTCTTGCCAACGTCAAAATCGATATGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(116-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Vibrio cholerae strain A1552

83.152

100

0.832
  pilU Pseudomonas stutzeri DSM 10701

58

95.109

0.552
  pilU Acinetobacter baylyi ADP1

55.271

95.38

0.527
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.231

88.315

0.399
  pilT Legionella pneumophila strain ERS1305867

42.773

92.12

0.394
  pilT Legionella pneumophila strain Lp02

42.773

92.12

0.394
  pilT Acinetobacter nosocomialis M2

42.478

92.12

0.391
  pilT Acinetobacter baumannii D1279779

42.478

92.12

0.391
  pilT Acinetobacter baumannii strain A118

42.478

92.12

0.391
  pilT Pseudomonas aeruginosa PAK

42.183

92.12

0.389
  pilT Acinetobacter baylyi ADP1

41.642

92.663

0.386
  pilT Pseudomonas stutzeri DSM 10701

41.003

92.12

0.378
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

41.317

90.761

0.375
  pilT Vibrio cholerae strain A1552

41.317

90.761

0.375
  pilT Neisseria gonorrhoeae MS11

40.361

90.217

0.364
  pilT Neisseria meningitidis 8013

40.361

90.217

0.364

Multiple sequence alignment