Detailed information NTG0055498

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: VPBB_RS12105
• Genome accession: NC_019955
• Coordinates: 2663592..2664557 (-)
• Length: 321 a.a.
• NCBI ID: WP_015297265.1
• Uniprot ID: Q9X6S5
• Organism: Vibrio parahaemolyticus BB22OP
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2658592..2669557

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VPBB_RS12090 (VPBB_2374)	recA	2659140..2660183 (-)	1044	WP_005478550.1	recombinase RecA	Machinery gene
VPBB_RS12095 (VPBB_2375)	pncC	2660384..2660866 (-)	483	WP_015297263.1	nicotinamide-nucleotide amidase	-
VPBB_RS12100 (VPBB_2376)	mutS	2660951..2663512 (+)	2562	WP_015297264.1	DNA mismatch repair protein MutS	-
VPBB_RS12105 (VPBB_2377)	rpoS	2663592..2664557 (-)	966	WP_015297265.1	RNA polymerase sigma factor RpoS	Regulator
VPBB_RS12110 (VPBB_2378)	-	2664638..2665561 (-)	924	WP_015297266.1	peptidoglycan DD-metalloendopeptidase family protein	-
VPBB_RS12115 (VPBB_2379)	-	2665576..2666202 (-)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
VPBB_RS12120 (VPBB_2380)	surE	2666202..2666978 (-)	777	WP_015297267.1	5'/3'-nucleotidase SurE	-
VPBB_RS12125 (VPBB_2381)	truD	2666978..2668021 (-)	1044	WP_015297268.1	tRNA pseudouridine(13) synthase TruD	-
VPBB_RS12130 (VPBB_2382)	ispF	2668068..2668544 (-)	477	WP_005455572.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
VPBB_RS12135 (VPBB_2383)	ispD	2668562..2669266 (-)	705	WP_005487195.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
VPBB_RS12140 (VPBB_2384)	ftsB	2669268..2669549 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 321 a.a.
• Molecular weight: 36636.31 Da
• Isoelectric Point: 4.5995

>NTDB_id=55498 VPBB_RS12105 WP_015297265.1 2663592..2664557(-) (rpoS) [Vibrio parahaemolyticus BB22OP]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRRLREILIKQGLNMENLFNVED
D

Nucleotide

• Length: 966 bp

>NTDB_id=55498 VPBB_RS12105 WP_015297265.1 2663592..2664557(-) (rpoS) [Vibrio parahaemolyticus BB22OP]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATGGAAAACTTGTTTAACGTTGAAGAC
GATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-301)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: Q9X6S5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.437	100	0.847