Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   VPBB_RS11970 Genome accession   NC_019955
Coordinates   2640954..2641472 (-) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus BB22OP     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2635954..2646472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VPBB_RS11945 (VPBB_2354) rimM 2636063..2636611 (-) 549 WP_005462552.1 ribosome maturation factor RimM -
  VPBB_RS11950 (VPBB_2355) rpsP 2636640..2636888 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  VPBB_RS11955 (VPBB_2356) ffh 2637098..2638480 (-) 1383 WP_015297255.1 signal recognition particle protein -
  VPBB_RS11960 (VPBB_2357) - 2638693..2639487 (+) 795 WP_005462565.1 inner membrane protein YpjD -
  VPBB_RS11965 (VPBB_2358) - 2639613..2640893 (+) 1281 WP_005462557.1 CNNM domain-containing protein -
  VPBB_RS11970 (VPBB_2359) luxS 2640954..2641472 (-) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  VPBB_RS11975 (VPBB_2360) - 2641539..2642144 (-) 606 WP_015297256.1 hypothetical protein -
  VPBB_RS11980 (VPBB_2361) gshA 2642169..2643737 (-) 1569 WP_015297257.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=55495 VPBB_RS11970 WP_005462534.1 2640954..2641472(-) (luxS) [Vibrio parahaemolyticus BB22OP]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=55495 VPBB_RS11970 WP_005462534.1 2640954..2641472(-) (luxS) [Vibrio parahaemolyticus BB22OP]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment