Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   L0F67_RS09130 Genome accession   NZ_CP090556
Coordinates   1840904..1842448 (+) Length   514 a.a.
NCBI ID   WP_014991476.1    Uniprot ID   A0ABT1WRC7
Organism   Actinobacillus suis strain D20_277     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1835904..1847448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0F67_RS09110 (L0F67_09095) efp 1836504..1837070 (-) 567 WP_014991472.1 elongation factor P -
  L0F67_RS09115 (L0F67_09100) - 1837221..1837778 (+) 558 WP_014991473.1 hypothetical protein -
  L0F67_RS09120 (L0F67_09105) epmB 1837860..1838861 (+) 1002 WP_014991474.1 EF-P beta-lysylation protein EpmB -
  L0F67_RS09125 (L0F67_09110) asnS 1838965..1840367 (-) 1403 Protein_1747 asparagine--tRNA ligase -
  L0F67_RS09130 (L0F67_09115) sbcB 1840904..1842448 (+) 1545 WP_014991476.1 exodeoxyribonuclease I Machinery gene
  L0F67_RS09135 (L0F67_09120) - 1842465..1843055 (+) 591 WP_014991477.1 DNA glycosylase -
  L0F67_RS09140 (L0F67_09125) - 1843059..1843877 (+) 819 WP_014991478.1 PHP domain-containing protein -
  L0F67_RS12355 - 1843917..1844536 (-) 620 Protein_1751 Fe2+/Pb2+ permease -
  L0F67_RS09155 (L0F67_09140) efeB 1844547..1845736 (-) 1190 Protein_1752 iron uptake transporter deferrochelatase/peroxidase subunit -
  L0F67_RS09160 (L0F67_09145) efeO 1845751..1846562 (-) 812 Protein_1753 iron uptake system protein EfeO -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 58533.50 Da        Isoelectric Point: 5.6347

>NTDB_id=554893 L0F67_RS09130 WP_014991476.1 1840904..1842448(+) (sbcB) [Actinobacillus suis strain D20_277]
MNKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVMVTGITPQQCNAEGVSEPEF
AARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPYEYSWKNGNSRWDLLDLVRACYALRPDGIEWVTDENGVPNF
KLENLTKANGIAHENAHDAMADVYATIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGDMTPLVHVSGMFGNARGNTA
WIAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVSLKGVHINRCPIIAPAKVLLPENAARL
GIDRERCLENLKLLKANKSLVREKVTEIFMEERRFESSANVETTLYDGFFSPADKNNMAILRTLPPQELAHHGLQFADER
VEALLFHYRARHYPETLSRAEQIKWQKYCHQQIDAKSAQFAEAIDNLFQIHHDNPEKVKLLENLTAYAAQIAEFQVVKHT
DNAQNEQLVSALNQVVEQGMDKAAKLEMLKALIK

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=554893 L0F67_RS09130 WP_014991476.1 1840904..1842448(+) (sbcB) [Actinobacillus suis strain D20_277]
ATGAATAAAAATCTTACTTTTTTCTTTTATGATTACGAAAGTTTCGGTGTGAGTCCGGCGTTAGATCGTCCGGCACAGTT
TGCCGGTATTCGTACCGATAGTGATTTTAATATCATCGGTGAGCCGGTGATGTTCTATTGTAAGCAAACACCGGATTATT
TACCCTCGCCCGAAGCGGTGATGGTAACCGGTATCACTCCGCAACAGTGTAACGCTGAAGGCGTGTCAGAACCGGAATTT
GCTGCACGTATTCACGCTGAATTCAGCCAACCGAACACTTGTATTTTAGGCTATAACAATATTCGTTATGATGATGAAAT
GACCCGTTATACCTTTTTCCGCAATTTCTTTGACCCGTATGAATATAGTTGGAAAAACGGCAATTCACGTTGGGATCTGT
TAGATCTTGTTCGAGCTTGTTATGCACTGCGTCCGGATGGTATTGAATGGGTAACGGACGAAAACGGTGTGCCGAATTTC
AAATTAGAGAATCTCACCAAAGCGAACGGCATTGCTCATGAAAATGCGCACGATGCAATGGCGGACGTTTACGCCACGAT
TGCGATGGCGAAATTGATTAAGCAAAAACAGCCGAAACTTTTCCAATTTTTCTTTGAAAATCGTGGTAAGAAAGAAATTG
AGAAAATGATTGATACCGGTGATATGACTCCGTTGGTACACGTTTCCGGTATGTTTGGCAACGCACGAGGCAATACTGCT
TGGATTGCACCGATTGCGTGGCATCCGACCAATCAAAATCAAGTGTTATGCTGCGATCTATCGGGCGATGTTAGTGCCTT
ATTAACGGATTCGGCAGAAGAATTACGTACTCGTTTATACACTAAAAAAGAAGAGTTAGCTGAAGGTGTTGCACCCGTGT
CATTAAAAGGCGTGCATATCAACCGCTGTCCGATTATTGCGCCGGCAAAAGTGTTGTTGCCTGAAAATGCGGCTCGCTTA
GGCATTGATCGTGAGCGTTGCTTGGAAAATCTCAAATTACTGAAAGCAAATAAAAGTTTAGTACGTGAGAAAGTAACTGA
AATTTTTATGGAAGAACGTCGTTTCGAGTCTTCTGCGAATGTGGAAACCACGTTATATGACGGTTTCTTCTCGCCGGCGG
ATAAAAATAATATGGCGATTTTACGTACTTTACCGCCGCAAGAATTGGCGCATCACGGCTTACAGTTTGCTGATGAACGA
GTAGAAGCTTTACTATTCCACTATCGTGCTAGACATTATCCCGAAACATTGAGCCGAGCGGAACAGATTAAATGGCAGAA
ATATTGCCATCAGCAGATAGATGCCAAATCGGCACAATTTGCCGAAGCGATTGATAACTTATTCCAAATTCATCACGATA
ATCCGGAAAAGGTAAAATTATTGGAAAATTTGACCGCTTACGCTGCACAAATTGCGGAATTTCAGGTAGTTAAACACACC
GATAATGCGCAAAATGAACAGTTGGTTTCAGCCTTAAATCAAGTGGTGGAACAGGGTATGGATAAAGCGGCGAAGTTGGA
AATGCTAAAGGCATTAATTAAATAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(9-188)

Exonuclease C-terminal (ExoI_SH3)

(208-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

54.176

90.856

0.492