Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   L0F67_RS03070 Genome accession   NZ_CP090556
Coordinates   610700..611689 (-) Length   329 a.a.
NCBI ID   WP_015674158.1    Uniprot ID   A0ABT1WUJ1
Organism   Actinobacillus suis strain D20_277     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 605700..616689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0F67_RS03045 (L0F67_03040) rbsK 605770..606681 (-) 912 WP_015674153.1 ribokinase -
  L0F67_RS03050 (L0F67_03045) rbsB 606754..607626 (-) 873 WP_015674154.1 ribose ABC transporter substrate-binding protein RbsB -
  L0F67_RS03055 (L0F67_03050) rbsC 607650..608609 (-) 960 WP_015674155.1 ribose ABC transporter permease -
  L0F67_RS03060 (L0F67_03055) rbsA 608666..610147 (-) 1482 WP_015674156.1 ribose ABC transporter ATP-binding protein RbsA -
  L0F67_RS03065 (L0F67_03060) rbsD 610160..610579 (-) 420 WP_015674157.1 D-ribose pyranase -
  L0F67_RS03070 (L0F67_03065) cytR 610700..611689 (-) 990 WP_015674158.1 substrate-binding domain-containing protein Regulator
  L0F67_RS03075 (L0F67_03070) gntR 611827..612825 (+) 999 WP_015674159.1 gluconate operon transcriptional repressor GntR -
  L0F67_RS03080 (L0F67_03075) - 612920..613432 (-) 513 WP_015674160.1 gluconokinase -
  L0F67_RS03085 (L0F67_03080) - 613610..614958 (+) 1349 Protein_584 GntP family permease -
  L0F67_RS03090 (L0F67_03085) - 615127..616095 (+) 969 WP_015674162.1 mannose/fructose/sorbose PTS transporter subunit IIA -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 36898.22 Da        Isoelectric Point: 6.5005

>NTDB_id=554879 L0F67_RS03070 WP_015674158.1 610700..611689(-) (cytR) [Actinobacillus suis strain D20_277]
MATMKDIARIAGVSTSTVSHVINNSRFVSDEIRQRIEKVVAELNYTPSLVARSLKVKETNTIGMLVTTSSNPFFAEVVRH
VERYCEQHNYHLILVNTDGNSTNLEQHLARLLRKQVDGLLLMCSEPQDLDESVMANIQLPMVVIDWWQQALKADKVHENS
ELGGYLATKALIDAGYTEIAVITGEQSKSHTLNRLQGYKRAILEANLQIRSEWIVEGHFDYQAGLECASRLLALNSRPQA
IFAMSDSIAIGVYQAAWQAGLRIPQDIAVIGYDNIELAQYLAPPLSTIHQPKARLAKNAVEQLIARIHQPDKAYQEIELT
PELVVRRSF

Nucleotide


Download         Length: 990 bp        

>NTDB_id=554879 L0F67_RS03070 WP_015674158.1 610700..611689(-) (cytR) [Actinobacillus suis strain D20_277]
ATGGCAACAATGAAAGATATAGCTCGGATTGCGGGCGTTTCCACTTCCACCGTCTCCCACGTGATCAATAACTCACGTTT
TGTGAGTGACGAAATTCGCCAGCGGATCGAAAAAGTGGTGGCGGAACTCAATTACACGCCTTCATTGGTGGCTCGCAGCC
TGAAAGTAAAAGAAACCAACACAATCGGCATGTTAGTTACCACCAGCAGTAACCCGTTTTTTGCGGAAGTGGTGCGTCAT
GTTGAGCGTTATTGCGAGCAACATAACTATCATTTAATTTTGGTAAACACTGACGGTAACAGTACCAATTTGGAACAACA
TTTAGCCCGCTTGTTACGCAAACAAGTGGACGGTTTATTATTGATGTGTTCCGAACCGCAAGATTTAGATGAAAGCGTGA
TGGCAAATATTCAATTACCGATGGTGGTGATTGACTGGTGGCAACAGGCGCTAAAAGCGGACAAAGTGCATGAAAATTCG
GAATTAGGCGGTTATCTTGCGACAAAAGCGTTAATTGATGCCGGCTATACCGAGATTGCGGTGATTACCGGCGAACAATC
GAAATCCCATACATTAAACCGTTTACAAGGTTACAAGCGGGCGATTTTAGAGGCAAATTTGCAAATTCGTTCCGAATGGA
TAGTTGAAGGTCATTTTGATTATCAAGCCGGTTTGGAATGTGCAAGCCGATTATTGGCGCTGAATTCTCGCCCTCAAGCG
ATTTTTGCGATGAGCGATAGCATTGCCATTGGCGTATATCAAGCCGCTTGGCAAGCCGGTTTGCGTATTCCGCAAGATAT
TGCGGTGATCGGTTACGATAATATCGAATTAGCACAATATCTCGCTCCGCCGCTTTCTACGATTCATCAACCCAAAGCCC
GTTTGGCAAAAAATGCGGTGGAACAGTTGATTGCCCGTATTCATCAGCCGGATAAAGCCTATCAAGAAATCGAACTTACC
CCCGAACTTGTCGTTCGCCGTTCCTTTTAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.061

100

0.362