Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   LZ756_RS08435 Genome accession   NZ_CP090547
Coordinates   1731596..1732012 (-) Length   138 a.a.
NCBI ID   WP_004085459.1    Uniprot ID   B2I4N3
Organism   Xylella fastidiosa subsp. sandyi strain OC8     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1726596..1737012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ756_RS08425 (LZ756_08425) - 1728966..1731008 (-) 2043 WP_020851052.1 methyl-accepting chemotaxis protein -
  LZ756_RS08430 (LZ756_08430) - 1731048..1731578 (-) 531 WP_020851053.1 chemotaxis protein CheW -
  LZ756_RS08435 (LZ756_08435) pilG 1731596..1732012 (-) 417 WP_004085459.1 response regulator Regulator
  LZ756_RS08440 (LZ756_08440) gshB 1732269..1733213 (+) 945 WP_020851054.1 glutathione synthase -
  LZ756_RS08445 (LZ756_08445) - 1733215..1734090 (+) 876 WP_012382557.1 energy transducer TonB -
  LZ756_RS08450 (LZ756_08450) - 1734389..1734884 (+) 496 Protein_1654 DUF6216 family protein -
  LZ756_RS13355 - 1734853..1735113 (+) 261 WP_020851056.1 DUF6216 family protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15325.02 Da        Isoelectric Point: 9.7976

>NTDB_id=554850 LZ756_RS08435 WP_004085459.1 1731596..1732012(-) (pilG) [Xylella fastidiosa subsp. sandyi strain OC8]
MIKSVASGKELAGLRVMVIDDSKTIRRTAETLLKREGCEVVTAIDGFEALAKIADQKSQIIFVDIMMPRLDGYQTCALIK
NNNLFKSTPVIMLSSKDGLFDKARGRVVGSEQYLTKPFTREELLSAIRTYVNPLKLAV

Nucleotide


Download         Length: 417 bp        

>NTDB_id=554850 LZ756_RS08435 WP_004085459.1 1731596..1732012(-) (pilG) [Xylella fastidiosa subsp. sandyi strain OC8]
ATGATTAAAAGTGTTGCTAGCGGCAAGGAACTCGCAGGTCTTAGGGTGATGGTCATTGATGACTCAAAAACCATAAGACG
TACCGCTGAAACGCTTCTTAAGCGTGAAGGGTGTGAGGTGGTTACCGCTATTGATGGCTTTGAAGCCTTAGCGAAAATTG
CTGATCAGAAGTCGCAGATTATTTTTGTCGATATTATGATGCCGCGCTTGGATGGTTATCAAACTTGCGCGTTGATAAAA
AACAATAACTTGTTTAAGTCGACTCCAGTGATCATGCTTTCTTCTAAAGATGGCTTATTCGATAAGGCGCGCGGTCGTGT
GGTTGGTTCCGAGCAATATCTGACCAAACCTTTTACACGCGAGGAGTTGTTAAGTGCCATCCGTACATATGTTAATCCTT
TAAAATTAGCTGTTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B2I4N3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

73.77

88.406

0.652