Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | LZ756_RS08245 | Genome accession | NZ_CP090547 |
| Coordinates | 1685724..1686917 (-) | Length | 397 a.a. |
| NCBI ID | WP_020852793.1 | Uniprot ID | - |
| Organism | Xylella fastidiosa subsp. sandyi strain OC8 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1680724..1691917
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LZ756_RS08215 (LZ756_08215) | ruvA | 1681531..1682115 (-) | 585 | WP_024748695.1 | Holliday junction branch migration protein RuvA | - |
| LZ756_RS08220 (LZ756_08220) | ruvC | 1682201..1682722 (-) | 522 | WP_011097831.1 | crossover junction endodeoxyribonuclease RuvC | - |
| LZ756_RS08225 (LZ756_08225) | - | 1682842..1683576 (-) | 735 | WP_004572895.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| LZ756_RS08230 (LZ756_08230) | - | 1683705..1684214 (-) | 510 | WP_230577777.1 | DUF2726 domain-containing protein | - |
| LZ756_RS08235 (LZ756_08235) | - | 1684268..1684540 (-) | 273 | WP_011097829.1 | oxidative damage protection protein | - |
| LZ756_RS08240 (LZ756_08240) | mutY | 1684575..1685624 (-) | 1050 | WP_020852794.1 | A/G-specific adenine glycosylase | - |
| LZ756_RS08245 (LZ756_08245) | pilA | 1685724..1686917 (-) | 1194 | WP_020852793.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| LZ756_RS08250 (LZ756_08250) | - | 1687491..1687964 (+) | 474 | WP_004572890.1 | hypothetical protein | - |
| LZ756_RS08255 (LZ756_08255) | - | 1688280..1688894 (+) | 615 | WP_020852792.1 | HNH endonuclease | - |
| LZ756_RS08260 (LZ756_08260) | - | 1688944..1689087 (-) | 144 | WP_155244293.1 | hypothetical protein | - |
| LZ756_RS08265 (LZ756_08265) | - | 1689090..1689914 (-) | 825 | WP_020852791.1 | TatD family hydrolase | - |
| LZ756_RS08270 (LZ756_08270) | - | 1690267..1691763 (+) | 1497 | WP_020852790.1 | anthranilate synthase component I family protein | - |
Sequence
Protein
Download Length: 397 a.a. Molecular weight: 42793.97 Da Isoelectric Point: 7.0688
>NTDB_id=554848 LZ756_RS08245 WP_020852793.1 1685724..1686917(-) (pilA) [Xylella fastidiosa subsp. sandyi strain OC8]
MLSFLRRKKPTNAISDNEGSKYSAEEMAAAFPKAPSLDEAPDQEQTSTTPLLSSADQPALLTHSTSSAFTELAISTCNDT
SGASTPTVSVDKPNWRERLRGSLFARNINALFSNNPRLDENLLDEIETALITADVGVSTTNAIVDGLRKRMKAREFADIQ
TLLAALRNELITILRPVSKPLIVKRDALPFVFLVVGVNGVGKTTTIGKLAKWFKRDGYSLMLAAGDTFRAAAVAQLQAWG
ERNSITVIAQKGPNADAASVVYDALQAAKARSIEVLIADTAGRLHTQIGLMNELSKIRRVLGKLDSTAPHEVLMVIDGTT
GQNALSQLRQFHVAVNVTGIVVTKLDGTAKGGVVFTLAREFGIPIHFISIGEQLEDMHFFDPEAFVDALLPKTLGNA
MLSFLRRKKPTNAISDNEGSKYSAEEMAAAFPKAPSLDEAPDQEQTSTTPLLSSADQPALLTHSTSSAFTELAISTCNDT
SGASTPTVSVDKPNWRERLRGSLFARNINALFSNNPRLDENLLDEIETALITADVGVSTTNAIVDGLRKRMKAREFADIQ
TLLAALRNELITILRPVSKPLIVKRDALPFVFLVVGVNGVGKTTTIGKLAKWFKRDGYSLMLAAGDTFRAAAVAQLQAWG
ERNSITVIAQKGPNADAASVVYDALQAAKARSIEVLIADTAGRLHTQIGLMNELSKIRRVLGKLDSTAPHEVLMVIDGTT
GQNALSQLRQFHVAVNVTGIVVTKLDGTAKGGVVFTLAREFGIPIHFISIGEQLEDMHFFDPEAFVDALLPKTLGNA
Nucleotide
Download Length: 1194 bp
>NTDB_id=554848 LZ756_RS08245 WP_020852793.1 1685724..1686917(-) (pilA) [Xylella fastidiosa subsp. sandyi strain OC8]
ATGTTAAGCTTTCTACGCCGCAAGAAGCCCACCAATGCCATCAGCGACAACGAGGGGAGCAAATACAGTGCTGAAGAGAT
GGCTGCTGCCTTTCCAAAAGCTCCTTCGTTGGATGAGGCTCCAGACCAAGAGCAAACTAGCACCACGCCATTGCTATCTT
CAGCAGATCAGCCTGCGTTACTGACCCACTCTACGAGTAGTGCCTTTACAGAGCTAGCAATCTCCACTTGCAACGACACA
TCGGGGGCGAGTACCCCAACAGTTTCGGTGGATAAACCCAATTGGCGTGAGCGCCTACGTGGCAGTCTCTTCGCGCGGAA
CATCAATGCTTTATTCTCGAATAACCCGCGTTTGGATGAAAATCTGCTTGATGAGATTGAAACCGCGTTGATTACGGCTG
ATGTAGGCGTGTCTACGACTAATGCCATAGTTGACGGTTTACGTAAACGTATGAAAGCACGTGAATTCGCTGATATCCAA
ACACTGTTAGCTGCATTACGTAATGAATTAATCACGATACTGCGTCCTGTTTCTAAACCACTGATCGTCAAACGCGATGC
ACTTCCATTTGTGTTTCTTGTTGTAGGTGTCAATGGTGTTGGTAAGACTACAACAATCGGCAAGTTGGCGAAGTGGTTCA
AGAGGGATGGCTACAGCTTGATGTTGGCTGCCGGTGATACCTTCCGTGCTGCCGCTGTCGCGCAGTTACAGGCATGGGGC
GAGCGTAATAGTATTACGGTGATCGCACAAAAAGGACCGAATGCAGATGCTGCTTCGGTAGTCTATGATGCGCTGCAAGC
AGCCAAGGCGCGTAGCATTGAGGTGCTCATCGCCGATACCGCAGGCCGCCTGCATACCCAGATTGGTTTAATGAACGAGT
TGAGCAAAATCCGCCGTGTGCTCGGTAAGCTTGATAGCACCGCACCACATGAAGTACTGATGGTGATTGATGGTACTACT
GGGCAAAATGCGCTTTCGCAATTACGCCAATTTCATGTTGCCGTGAACGTCACTGGTATTGTGGTAACCAAGCTCGATGG
CACTGCCAAGGGCGGGGTAGTCTTCACGTTGGCACGTGAATTTGGCATTCCAATCCACTTCATCAGCATAGGCGAGCAGC
TGGAAGATATGCATTTTTTTGACCCTGAGGCATTCGTAGACGCGCTACTGCCAAAAACATTAGGAAATGCTTAA
ATGTTAAGCTTTCTACGCCGCAAGAAGCCCACCAATGCCATCAGCGACAACGAGGGGAGCAAATACAGTGCTGAAGAGAT
GGCTGCTGCCTTTCCAAAAGCTCCTTCGTTGGATGAGGCTCCAGACCAAGAGCAAACTAGCACCACGCCATTGCTATCTT
CAGCAGATCAGCCTGCGTTACTGACCCACTCTACGAGTAGTGCCTTTACAGAGCTAGCAATCTCCACTTGCAACGACACA
TCGGGGGCGAGTACCCCAACAGTTTCGGTGGATAAACCCAATTGGCGTGAGCGCCTACGTGGCAGTCTCTTCGCGCGGAA
CATCAATGCTTTATTCTCGAATAACCCGCGTTTGGATGAAAATCTGCTTGATGAGATTGAAACCGCGTTGATTACGGCTG
ATGTAGGCGTGTCTACGACTAATGCCATAGTTGACGGTTTACGTAAACGTATGAAAGCACGTGAATTCGCTGATATCCAA
ACACTGTTAGCTGCATTACGTAATGAATTAATCACGATACTGCGTCCTGTTTCTAAACCACTGATCGTCAAACGCGATGC
ACTTCCATTTGTGTTTCTTGTTGTAGGTGTCAATGGTGTTGGTAAGACTACAACAATCGGCAAGTTGGCGAAGTGGTTCA
AGAGGGATGGCTACAGCTTGATGTTGGCTGCCGGTGATACCTTCCGTGCTGCCGCTGTCGCGCAGTTACAGGCATGGGGC
GAGCGTAATAGTATTACGGTGATCGCACAAAAAGGACCGAATGCAGATGCTGCTTCGGTAGTCTATGATGCGCTGCAAGC
AGCCAAGGCGCGTAGCATTGAGGTGCTCATCGCCGATACCGCAGGCCGCCTGCATACCCAGATTGGTTTAATGAACGAGT
TGAGCAAAATCCGCCGTGTGCTCGGTAAGCTTGATAGCACCGCACCACATGAAGTACTGATGGTGATTGATGGTACTACT
GGGCAAAATGCGCTTTCGCAATTACGCCAATTTCATGTTGCCGTGAACGTCACTGGTATTGTGGTAACCAAGCTCGATGG
CACTGCCAAGGGCGGGGTAGTCTTCACGTTGGCACGTGAATTTGGCATTCCAATCCACTTCATCAGCATAGGCGAGCAGC
TGGAAGATATGCATTTTTTTGACCCTGAGGCATTCGTAGACGCGCTACTGCCAAAAACATTAGGAAATGCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
42.577 |
89.924 |
0.383 |