Detailed information    

insolico Bioinformatically predicted

Overview

Name   letS   Type   Regulator
Locus tag   LZ756_RS04230 Genome accession   NZ_CP090547
Coordinates   940107..940298 (-) Length   63 a.a.
NCBI ID   WP_020851841.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. sandyi strain OC8     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 935107..945298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ756_RS04200 (LZ756_04200) metK 935791..937002 (+) 1212 WP_234759381.1 methionine adenosyltransferase -
  LZ756_RS04215 (LZ756_04215) - 937375..937947 (+) 573 WP_020851844.1 RNA pyrophosphohydrolase -
  LZ756_RS04220 (LZ756_04220) - 938059..938274 (+) 216 WP_024749091.1 bacterioferritin-associated ferredoxin -
  LZ756_RS04225 (LZ756_04225) bfr 938356..938820 (+) 465 WP_004083622.1 bacterioferritin -
  LZ756_RS04230 (LZ756_04230) letS 940107..940298 (-) 192 WP_020851841.1 hypothetical protein Regulator
  LZ756_RS04235 (LZ756_04235) - 941064..942764 (-) 1701 WP_020851839.1 EAL domain-containing protein -
  LZ756_RS04240 (LZ756_04240) - 943726..944403 (+) 678 WP_020851838.1 DUF6776 family protein -
  LZ756_RS04245 (LZ756_04245) - 944405..944842 (+) 438 WP_020851837.1 polymer-forming cytoskeletal protein -
  LZ756_RS04250 (LZ756_04250) erpA 944877..945263 (+) 387 WP_010892935.1 iron-sulfur cluster insertion protein ErpA -

Sequence

Protein


Download         Length: 63 a.a.        Molecular weight: 6926.96 Da        Isoelectric Point: 6.9165

>NTDB_id=554828 LZ756_RS04230 WP_020851841.1 940107..940298(-) (letS) [Xylella fastidiosa subsp. sandyi strain OC8]
MARTARITCVCFEVHDTGICISSEQQIRLFSSFSQADTSTTRLYESTALGLAWLGLAWLGLAK

Nucleotide


Download         Length: 192 bp        

>NTDB_id=554828 LZ756_RS04230 WP_020851841.1 940107..940298(-) (letS) [Xylella fastidiosa subsp. sandyi strain OC8]
TTGGCGAGAACGGCACGCATCACATGCGTGTGTTTCGAAGTGCACGATACCGGTATCTGTATTTCTTCCGAACAGCAAAT
ACGACTGTTCTCTTCGTTCAGCCAAGCTGACACTTCAACCACACGCCTATACGAGAGCACAGCGCTTGGCTTGGCTTGGC
TTGGCTTGGCTTGGCTTGGCTTGGCAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letS Legionella pneumophila strain ERS1305867

57.5

63.492

0.365