Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   LZ756_RS00460 Genome accession   NZ_CP090547
Coordinates   116728..117363 (+) Length   211 a.a.
NCBI ID   WP_020852082.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. sandyi strain OC8     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 111728..122363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ756_RS00450 (LZ756_00450) - 113175..114203 (-) 1029 WP_020851805.1 right-handed parallel beta-helix repeat-containing protein -
  LZ756_RS00455 (LZ756_00455) - 115224..116255 (+) 1032 WP_024748973.1 nitronate monooxygenase family protein -
  LZ756_RS00460 (LZ756_00460) dinR/lexA 116728..117363 (+) 636 WP_020852082.1 transcriptional repressor LexA Regulator
  LZ756_RS00465 (LZ756_00465) recA 117545..118588 (+) 1044 WP_024748974.1 recombinase RecA Machinery gene
  LZ756_RS00470 (LZ756_00470) alaS 119076..121730 (+) 2655 WP_042836357.1 alanine--tRNA ligase -
  LZ756_RS00475 (LZ756_00475) csrA 121869..122084 (+) 216 WP_004085529.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23299.71 Da        Isoelectric Point: 6.3427

>NTDB_id=554810 LZ756_RS00460 WP_020852082.1 116728..117363(+) (dinR/lexA) [Xylella fastidiosa subsp. sandyi strain OC8]
MSLSDIQQAILSLITNNINADGVSPSQTEIARAFGFKGVRAVQHHLDVLEQQGMIRRVPGQARGIRLKHLTEVDEAALAL
QSKDVLRLPVLGRVAAGQPIGADIGEDRVVLLDRVFFSPAPDYLLRVQGDSMRDEGIFDGDLIGVHRTQDAHSGQIVVAR
IDDEITVKLLKISKDRIRLLPRNPDFAPIEVRSDQDFAIEGLYCGLLRPNR

Nucleotide


Download         Length: 636 bp        

>NTDB_id=554810 LZ756_RS00460 WP_020852082.1 116728..117363(+) (dinR/lexA) [Xylella fastidiosa subsp. sandyi strain OC8]
ATGAGTTTGAGCGATATTCAGCAGGCAATCCTGTCATTGATTACCAACAACATCAACGCTGATGGCGTTTCTCCTTCGCA
GACGGAGATCGCGCGTGCATTCGGCTTCAAAGGGGTTCGCGCGGTGCAGCATCACCTTGATGTATTGGAGCAACAGGGGA
TGATTCGCCGCGTCCCTGGACAGGCGCGTGGCATCCGGTTGAAGCATCTTACTGAGGTGGATGAGGCTGCGTTAGCTTTG
CAGAGTAAGGATGTGTTGCGCTTGCCAGTGCTCGGCCGCGTTGCGGCTGGTCAGCCGATCGGTGCTGATATCGGTGAGGA
TCGCGTGGTGTTGTTGGATCGTGTGTTCTTCTCCCCAGCACCGGATTATCTGTTGAGGGTGCAAGGTGATTCGATGCGCG
ATGAAGGAATTTTCGATGGTGATTTGATCGGCGTACATCGTACGCAGGATGCGCATTCTGGGCAAATTGTGGTGGCGCGC
ATTGATGATGAGATTACCGTCAAATTGTTGAAGATCAGTAAAGACCGGATTCGTTTGCTACCGCGTAATCCTGACTTTGC
ACCGATTGAGGTGAGGTCAGATCAGGATTTCGCCATTGAGGGATTGTATTGCGGTTTGCTGCGCCCCAACCGGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(89-202)

LexA DNA binding domain (LexA_DNA_bind)

(2-64)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

37.981

98.578

0.374