Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   J8C06_RS08540 Genome accession   NZ_CP072648
Coordinates   2043890..2045281 (-) Length   463 a.a.
NCBI ID   WP_211428289.1    Uniprot ID   -
Organism   Chloracidobacterium validum strain BV2-C     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2038890..2050281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8C06_RS08515 (J8C06_08515) - 2039399..2040337 (-) 939 WP_211428284.1 YihY/virulence factor BrkB family protein -
  J8C06_RS08520 (J8C06_08520) - 2040396..2041673 (-) 1278 WP_211428285.1 glucose-1-phosphate adenylyltransferase -
  J8C06_RS08525 (J8C06_08525) - 2041762..2042184 (-) 423 WP_211428286.1 hypothetical protein -
  J8C06_RS08530 (J8C06_08530) - 2042326..2043201 (+) 876 WP_211428287.1 hypothetical protein -
  J8C06_RS08535 (J8C06_08535) - 2043250..2043876 (-) 627 WP_211428288.1 CvpA family protein -
  J8C06_RS08540 (J8C06_08540) radA 2043890..2045281 (-) 1392 WP_211428289.1 DNA repair protein RadA Machinery gene
  J8C06_RS08545 (J8C06_08545) queA 2045377..2046420 (+) 1044 WP_211428290.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  J8C06_RS08550 (J8C06_08550) - 2046517..2049306 (+) 2790 WP_211428291.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 49160.63 Da        Isoelectric Point: 6.1197

>NTDB_id=554799 J8C06_RS08540 WP_211428289.1 2043890..2045281(-) (radA) [Chloracidobacterium validum strain BV2-C]
MPKEKTIYACQQCSYQSRKWLGRCPDCGAWNTFVEEREEKTISAAAVARSLGGAKPGARATTRVAPTHYAQVPSQDDARF
SSGMAELDRVLGGGIVPGSLLLIGGDPGVGKSTLLLQMAAGLSCAGERVLYVSGEESERQIKLRGERLGLQPGDLHLLPE
TCLERVLEVVAELRPTLIVVDSVQTTYSERLDSAPGSVSQVRETAGQCLLLAKHQGVPVFLIGHVTKDGALAGPKTLEHI
VDTVIYFEGERHHNHRIMRATKNRFGATNELGLFEMTGLGLVPVANPSALFLQQRPVGVAGSVVVACMEGTRPMLVELQA
LVSSSKYGTGRRTVEGVEPNRVALLIAMLEKRAGLQMLGDDVFVNVAGGLTLDEPAVDLGIVAALASSFRNTAIDPATVV
FGEVGLAGEVRATSQPAVRLREIAAMGFERVVMPAGNLPGLELPEGLSVVGVRSVLDALDALF

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=554799 J8C06_RS08540 WP_211428289.1 2043890..2045281(-) (radA) [Chloracidobacterium validum strain BV2-C]
ATGCCGAAAGAAAAAACCATTTATGCCTGCCAGCAGTGTAGCTACCAAAGCCGAAAGTGGCTTGGCCGCTGCCCAGACTG
CGGCGCATGGAATACGTTTGTTGAGGAACGTGAAGAAAAGACCATCTCGGCGGCGGCGGTGGCCCGGAGTCTCGGCGGCG
CGAAGCCTGGGGCGCGCGCAACCACCAGGGTTGCGCCAACCCACTATGCGCAGGTGCCCAGTCAGGACGACGCCCGCTTC
TCATCGGGGATGGCGGAACTTGATCGCGTCCTTGGCGGCGGCATCGTGCCGGGCAGCCTATTGCTCATTGGCGGCGATCC
CGGTGTCGGCAAGTCAACGCTCCTGCTGCAAATGGCAGCCGGATTGAGTTGCGCCGGTGAACGGGTGCTTTACGTGAGTG
GCGAGGAATCCGAGCGCCAAATCAAGTTGCGCGGCGAACGCCTGGGCCTCCAGCCCGGCGACCTGCACCTGTTGCCGGAA
ACCTGTCTGGAACGGGTTCTGGAAGTCGTTGCCGAGCTTCGGCCGACGCTCATTGTGGTGGACTCCGTGCAAACCACCTA
TTCCGAACGACTGGACAGCGCGCCGGGCAGTGTCTCCCAAGTACGTGAAACTGCCGGACAATGCTTGCTGTTGGCGAAAC
ATCAGGGCGTGCCGGTGTTTCTCATTGGCCATGTGACCAAGGATGGCGCGCTGGCCGGACCGAAAACCCTCGAACATATC
GTGGACACGGTCATTTACTTCGAGGGCGAACGGCACCACAACCACCGGATCATGCGTGCCACCAAGAACCGCTTTGGCGC
GACCAATGAACTCGGCCTGTTTGAAATGACCGGCTTGGGCCTGGTGCCGGTAGCCAACCCATCGGCGCTGTTTTTGCAGC
AGCGGCCGGTGGGTGTGGCCGGGTCGGTGGTCGTGGCCTGCATGGAGGGAACCCGCCCGATGCTGGTCGAACTCCAGGCG
CTTGTCAGCAGCAGTAAGTACGGCACGGGCCGCCGGACGGTCGAAGGTGTCGAACCCAACCGCGTTGCCCTGTTGATTGC
CATGCTCGAAAAGCGCGCCGGACTCCAGATGCTCGGCGATGATGTGTTCGTCAATGTGGCCGGGGGACTGACCCTCGACG
AACCGGCCGTAGATTTGGGTATCGTGGCGGCACTGGCTTCGAGTTTTCGCAACACGGCGATTGATCCCGCAACCGTCGTG
TTTGGCGAAGTCGGCTTGGCCGGTGAGGTCCGCGCCACGAGCCAGCCCGCCGTCCGGCTGCGTGAAATTGCCGCCATGGG
GTTCGAGCGAGTTGTCATGCCAGCGGGAAATTTGCCAGGTCTTGAACTGCCGGAAGGCTTGAGCGTCGTCGGGGTGCGGT
CGGTTTTGGACGCGCTCGACGCGCTGTTTTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.634

99.136

0.512
  radA Streptococcus pneumoniae Rx1

48.596

100

0.486
  radA Streptococcus pneumoniae D39

48.596

100

0.486
  radA Streptococcus pneumoniae R6

48.596

100

0.486
  radA Streptococcus pneumoniae TIGR4

48.596

100

0.486
  radA Streptococcus mitis NCTC 12261

48.38

100

0.484
  radA Streptococcus mitis SK321

48.38

100

0.484