Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | LZ752_RS04810 | Genome accession | NZ_CP090518 |
| Coordinates | 1126426..1127619 (+) | Length | 397 a.a. |
| NCBI ID | WP_004572891.1 | Uniprot ID | B2I4S3 |
| Organism | Xylella fastidiosa subsp. fastidiosa strain Stag's Leap | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1121426..1132619
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LZ752_RS04785 (LZ752_04785) | - | 1121647..1122819 (-) | 1173 | Protein_934 | anthranilate synthase component I family protein | - |
| LZ752_RS11570 | - | 1122801..1123085 (-) | 285 | WP_118853459.1 | hypothetical protein | - |
| LZ752_RS04790 (LZ752_04790) | - | 1123438..1124244 (+) | 807 | WP_004572888.1 | TatD family hydrolase | - |
| LZ752_RS04795 (LZ752_04795) | - | 1124247..1124420 (+) | 174 | WP_161594804.1 | hypothetical protein | - |
| LZ752_RS04800 (LZ752_04800) | - | 1124470..1125030 (-) | 561 | WP_004572889.1 | HNH endonuclease | - |
| LZ752_RS04805 (LZ752_04805) | - | 1125380..1125853 (-) | 474 | WP_004572890.1 | hypothetical protein | - |
| LZ752_RS04810 (LZ752_04810) | pilA | 1126426..1127619 (+) | 1194 | WP_004572891.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| LZ752_RS04815 (LZ752_04815) | mutY | 1127719..1128768 (+) | 1050 | WP_004572892.1 | A/G-specific adenine glycosylase | - |
| LZ752_RS04820 (LZ752_04820) | - | 1128803..1129075 (+) | 273 | WP_011097829.1 | oxidative damage protection protein | - |
| LZ752_RS04825 (LZ752_04825) | - | 1129129..1129662 (+) | 534 | WP_228446171.1 | DUF2726 domain-containing protein | - |
| LZ752_RS04830 (LZ752_04830) | - | 1129791..1130525 (+) | 735 | WP_004572895.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| LZ752_RS04835 (LZ752_04835) | ruvC | 1130645..1131166 (+) | 522 | WP_011097831.1 | crossover junction endodeoxyribonuclease RuvC | - |
| LZ752_RS04840 (LZ752_04840) | ruvA | 1131252..1131836 (+) | 585 | WP_004572897.1 | Holliday junction branch migration protein RuvA | - |
Sequence
Protein
Download Length: 397 a.a. Molecular weight: 42821.04 Da Isoelectric Point: 8.0970
>NTDB_id=554774 LZ752_RS04810 WP_004572891.1 1126426..1127619(+) (pilA) [Xylella fastidiosa subsp. fastidiosa strain Stag's Leap]
MLSFLRRKKPTNAISDNERSKYSAEEMAAAFPKAPSLDEAPDQGQTSTTPLLSSADQPALLTHSTSSAFTELVISTCNDT
SGASTPTVSVDKPNWRERLRGSLFARNINALFSNNPRLDENLLDEIETALITADVGVSTTNAIVDGLRKRMKAREFADIQ
TLLAALRNELITILRPVSKPLIVKRDALPFVFLVVGVNGVGKTTTIGKLAKWFKRDGYSLMLAAGDTFRAAAVAQLQAWG
ERNSITVIAQKGPNADAASVVYDALQAAKARSIEVLIADTAGRLHTQIGLMNELSKIRRVLGKLDSTAPHEVLMVIDGTT
GQNALSQLRQFHAAVNVTGIVVTKLDGTAKGGVVFTLAREFGIPIHFISIGEQLEDMHFFDPEAFVDALLPKTLGNA
MLSFLRRKKPTNAISDNERSKYSAEEMAAAFPKAPSLDEAPDQGQTSTTPLLSSADQPALLTHSTSSAFTELVISTCNDT
SGASTPTVSVDKPNWRERLRGSLFARNINALFSNNPRLDENLLDEIETALITADVGVSTTNAIVDGLRKRMKAREFADIQ
TLLAALRNELITILRPVSKPLIVKRDALPFVFLVVGVNGVGKTTTIGKLAKWFKRDGYSLMLAAGDTFRAAAVAQLQAWG
ERNSITVIAQKGPNADAASVVYDALQAAKARSIEVLIADTAGRLHTQIGLMNELSKIRRVLGKLDSTAPHEVLMVIDGTT
GQNALSQLRQFHAAVNVTGIVVTKLDGTAKGGVVFTLAREFGIPIHFISIGEQLEDMHFFDPEAFVDALLPKTLGNA
Nucleotide
Download Length: 1194 bp
>NTDB_id=554774 LZ752_RS04810 WP_004572891.1 1126426..1127619(+) (pilA) [Xylella fastidiosa subsp. fastidiosa strain Stag's Leap]
ATGTTAAGCTTTCTACGCCGCAAGAAGCCCACCAATGCCATCAGCGACAACGAGCGGAGCAAATACAGTGCTGAAGAGAT
GGCTGCTGCCTTTCCAAAAGCTCCTTCGTTGGATGAGGCTCCAGACCAAGGGCAAACTAGCACCACGCCATTGCTATCTT
CAGCAGATCAGCCTGCGTTACTGACCCACTCTACGAGTAGTGCCTTTACAGAGCTAGTAATCTCCACTTGCAACGACACA
TCGGGGGCGAGTACCCCAACAGTTTCGGTGGATAAACCCAATTGGCGTGAGCGCCTACGTGGCAGTCTCTTCGCGCGGAA
CATCAATGCTTTATTCTCGAATAACCCGCGTTTGGATGAAAATCTGCTTGATGAGATTGAAACCGCGTTGATTACGGCTG
ATGTAGGCGTGTCTACGACTAATGCAATAGTTGACGGTTTGCGTAAACGTATGAAAGCACGTGAATTCGCTGATATCCAA
ACACTGTTAGCTGCATTACGTAATGAATTAATCACGATACTGCGTCCTGTTTCTAAACCACTGATCGTCAAACGCGATGC
ACTTCCATTTGTGTTTCTTGTTGTAGGTGTCAATGGTGTTGGTAAGACTACAACAATCGGCAAGTTGGCGAAGTGGTTCA
AGAGGGATGGCTACAGCTTGATGTTGGCTGCCGGTGATACCTTCCGTGCTGCCGCTGTCGCGCAGTTACAGGCATGGGGC
GAGCGTAATAGTATTACGGTGATCGCACAAAAAGGACCGAATGCAGATGCTGCTTCGGTAGTCTATGATGCGCTGCAAGC
AGCCAAGGCGCGTAGCATTGAGGTGCTCATCGCCGATACCGCAGGCCGCCTGCATACCCAAATTGGTTTAATGAACGAGT
TGAGCAAAATCCGCCGTGTGCTCGGTAAGCTTGATAGCACCGCACCACATGAAGTACTGATGGTGATTGACGGTACTACT
GGGCAAAATGCGCTTTCGCAATTACGCCAATTTCATGCTGCCGTGAACGTCACTGGTATTGTGGTAACCAAGCTTGATGG
CACTGCCAAGGGCGGGGTAGTCTTCACGTTGGCACGTGAATTTGGCATTCCAATCCACTTCATCAGCATAGGCGAGCAGC
TGGAAGATATGCATTTTTTTGACCCTGAGGCATTCGTAGACGCGCTACTGCCAAAAACATTAGGAAATGCTTAA
ATGTTAAGCTTTCTACGCCGCAAGAAGCCCACCAATGCCATCAGCGACAACGAGCGGAGCAAATACAGTGCTGAAGAGAT
GGCTGCTGCCTTTCCAAAAGCTCCTTCGTTGGATGAGGCTCCAGACCAAGGGCAAACTAGCACCACGCCATTGCTATCTT
CAGCAGATCAGCCTGCGTTACTGACCCACTCTACGAGTAGTGCCTTTACAGAGCTAGTAATCTCCACTTGCAACGACACA
TCGGGGGCGAGTACCCCAACAGTTTCGGTGGATAAACCCAATTGGCGTGAGCGCCTACGTGGCAGTCTCTTCGCGCGGAA
CATCAATGCTTTATTCTCGAATAACCCGCGTTTGGATGAAAATCTGCTTGATGAGATTGAAACCGCGTTGATTACGGCTG
ATGTAGGCGTGTCTACGACTAATGCAATAGTTGACGGTTTGCGTAAACGTATGAAAGCACGTGAATTCGCTGATATCCAA
ACACTGTTAGCTGCATTACGTAATGAATTAATCACGATACTGCGTCCTGTTTCTAAACCACTGATCGTCAAACGCGATGC
ACTTCCATTTGTGTTTCTTGTTGTAGGTGTCAATGGTGTTGGTAAGACTACAACAATCGGCAAGTTGGCGAAGTGGTTCA
AGAGGGATGGCTACAGCTTGATGTTGGCTGCCGGTGATACCTTCCGTGCTGCCGCTGTCGCGCAGTTACAGGCATGGGGC
GAGCGTAATAGTATTACGGTGATCGCACAAAAAGGACCGAATGCAGATGCTGCTTCGGTAGTCTATGATGCGCTGCAAGC
AGCCAAGGCGCGTAGCATTGAGGTGCTCATCGCCGATACCGCAGGCCGCCTGCATACCCAAATTGGTTTAATGAACGAGT
TGAGCAAAATCCGCCGTGTGCTCGGTAAGCTTGATAGCACCGCACCACATGAAGTACTGATGGTGATTGACGGTACTACT
GGGCAAAATGCGCTTTCGCAATTACGCCAATTTCATGCTGCCGTGAACGTCACTGGTATTGTGGTAACCAAGCTTGATGG
CACTGCCAAGGGCGGGGTAGTCTTCACGTTGGCACGTGAATTTGGCATTCCAATCCACTTCATCAGCATAGGCGAGCAGC
TGGAAGATATGCATTTTTTTGACCCTGAGGCATTCGTAGACGCGCTACTGCCAAAAACATTAGGAAATGCTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
42.857 |
89.924 |
0.385 |