Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   LZ752_RS04690 Genome accession   NZ_CP090518
Coordinates   1104810..1106810 (+) Length   666 a.a.
NCBI ID   WP_061278062.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. fastidiosa strain Stag's Leap     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1099810..1111810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ752_RS04670 (LZ752_04670) - 1100500..1100892 (-) 393 WP_004085448.1 HU family DNA-binding protein -
  LZ752_RS04675 (LZ752_04675) - 1101561..1102055 (+) 495 WP_004085447.1 SgcJ/EcaC family oxidoreductase -
  LZ752_RS04680 (LZ752_04680) msrA 1102159..1102809 (+) 651 WP_004085446.1 peptide-methionine (S)-S-oxide reductase MsrA -
  LZ752_RS04685 (LZ752_04685) - 1103405..1104703 (+) 1299 WP_004085445.1 dicarboxylate/amino acid:cation symporter -
  LZ752_RS04690 (LZ752_04690) recP/tkt 1104810..1106810 (+) 2001 WP_061278062.1 transketolase Machinery gene
  LZ752_RS04695 (LZ752_04695) rsmG 1106860..1107498 (-) 639 WP_027700708.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  LZ752_RS04700 (LZ752_04700) - 1107724..1108317 (-) 594 WP_021358333.1 4'-phosphopantetheinyl transferase superfamily protein -
  LZ752_RS04705 (LZ752_04705) xth 1108445..1109233 (-) 789 WP_027700709.1 exodeoxyribonuclease III -
  LZ752_RS04710 (LZ752_04710) - 1109990..1111462 (-) 1473 Protein_919 Tn3 family transposase -

Sequence

Protein


Download         Length: 666 a.a.        Molecular weight: 72972.51 Da        Isoelectric Point: 6.4755

>NTDB_id=554773 LZ752_RS04690 WP_061278062.1 1104810..1106810(+) (recP/tkt) [Xylella fastidiosa subsp. fastidiosa strain Stag's Leap]
MTKPTRRQLANAIRFLAADAVQAAHSGHPGMPMGMADIAEVLWNDFLRHNPNNPNWFNRDRFVLSNGHGSMLQYALLHLS
GYDLPLDELKRFRQLHSKTAGHPERSETPGIETTTGPLGQGFANAVGFALAEKLLAQRYNRPEHLIVDHRTWVFMGDGCL
MEGISHEAAALAGTWNLGKLICFWDDNNISIDGNTAGWFTEDTPARFEAYGWHVIRDIDGHDAEKIATAIQAAVAQENKP
SLLCCRTVIGFGSPNKAGKESSHGAPLGAEELEATRKMLDWPYGPFEIPSEIYDGWRANGTGMLRQAEWEQAFDNYARQY
PKEAAELTRRSHAELPTDFLSQLDAYIAKVHAAGPCIASRKASQMAIEAFAPLLPELIGGSADLAHSNLTLWKGSQTVVG
DAPNANYAYYGVREFGMSAIANGLALHGGFIAFDATFLVFSDYARNAVRMSALIPAHVIHVYTHDSIGLGEDGPTHQPVE
HLAALRYIPNNDVWRPCDAVESAVAWKAAITRNNGPSCLVFSRQNLPHQPRHDAQLEQIARGGYILADAASSIPDIILIA
TGSEVSLAIEAKKTLDAMQLKTRVVSMPSTNVFERQHPTYRESVLPSKVHKRVAIEAGVTGFWWQYVGLHGAVIGLDTFG
ASAPADVLYKHFNITAEHVVEVAKAL

Nucleotide


Download         Length: 2001 bp        

>NTDB_id=554773 LZ752_RS04690 WP_061278062.1 1104810..1106810(+) (recP/tkt) [Xylella fastidiosa subsp. fastidiosa strain Stag's Leap]
ATGACCAAACCCACACGCCGCCAGTTGGCCAACGCAATCCGTTTCCTTGCAGCTGATGCAGTACAAGCTGCTCATTCTGG
GCACCCGGGCATGCCGATGGGAATGGCAGATATCGCTGAAGTTCTTTGGAACGATTTCCTACGCCATAACCCTAACAACC
CGAACTGGTTTAACCGTGACCGCTTCGTTCTTTCCAACGGTCACGGCTCGATGTTGCAATATGCATTGCTGCATTTAAGT
GGCTATGACCTGCCGTTAGATGAACTCAAGCGATTCCGTCAGCTGCATAGCAAAACAGCTGGTCATCCTGAGCGTAGCGA
GACCCCAGGGATTGAGACGACTACTGGGCCGCTTGGTCAGGGGTTTGCTAACGCAGTGGGTTTTGCCTTGGCCGAGAAAC
TTCTAGCGCAACGCTACAACCGTCCGGAACATCTCATTGTCGATCACCGCACCTGGGTGTTCATGGGCGACGGCTGTCTC
ATGGAAGGTATCTCACATGAAGCAGCCGCGCTGGCGGGTACCTGGAACTTAGGCAAATTGATTTGTTTCTGGGATGACAA
CAACATTTCTATTGATGGCAATACTGCGGGTTGGTTTACCGAAGACACTCCAGCACGATTCGAAGCCTATGGTTGGCATG
TAATCCGCGATATTGATGGCCATGATGCGGAAAAAATCGCAACCGCAATCCAAGCCGCCGTTGCTCAAGAGAACAAGCCC
TCATTGCTATGCTGCCGTACCGTGATCGGATTTGGCTCACCAAATAAAGCAGGTAAAGAATCTTCGCATGGTGCCCCACT
AGGAGCGGAGGAACTGGAGGCCACGCGTAAGATGTTGGATTGGCCATACGGCCCGTTCGAGATTCCGTCCGAGATTTACG
ATGGTTGGCGTGCTAACGGCACAGGCATGCTACGTCAAGCTGAGTGGGAGCAGGCGTTCGACAACTATGCCCGACAGTAT
CCTAAGGAAGCAGCTGAATTAACCCGGCGCTCCCACGCTGAGTTACCTACTGATTTTCTCAGCCAATTGGATGCTTACAT
TGCCAAAGTTCACGCTGCGGGGCCCTGCATTGCTTCCCGTAAAGCATCGCAGATGGCGATTGAAGCATTTGCACCTTTAC
TTCCCGAGTTAATTGGTGGCTCGGCTGACTTGGCACATTCCAATCTAACGTTGTGGAAAGGGAGCCAAACAGTTGTTGGC
GACGCCCCCAACGCCAACTATGCCTATTACGGCGTACGTGAGTTTGGGATGAGTGCCATCGCAAATGGACTTGCATTGCA
TGGCGGCTTTATCGCCTTCGACGCGACATTTCTAGTATTCAGTGATTACGCCCGCAACGCAGTGCGTATGAGTGCATTGA
TCCCAGCACATGTGATTCACGTTTACACACATGATTCAATCGGACTTGGCGAAGACGGTCCAACGCATCAGCCTGTTGAA
CACTTAGCCGCACTGCGCTATATCCCCAACAATGACGTGTGGCGTCCCTGTGACGCAGTTGAATCTGCAGTGGCATGGAA
GGCGGCGATCACTCGCAATAACGGCCCGAGCTGTTTGGTGTTCAGCCGCCAAAACTTGCCGCACCAACCGCGCCATGATG
CACAACTTGAGCAGATTGCACGCGGTGGCTATATCTTGGCTGACGCGGCGAGCAGCATCCCCGACATCATTTTGATCGCG
ACCGGCTCGGAAGTCAGCCTAGCGATCGAAGCGAAAAAGACACTTGATGCGATGCAGCTAAAAACACGCGTGGTCTCGAT
GCCATCGACCAATGTGTTTGAACGTCAGCACCCCACCTACCGTGAGTCGGTCCTCCCATCGAAAGTCCACAAGCGTGTTG
CAATAGAAGCTGGCGTCACTGGTTTTTGGTGGCAGTACGTAGGGTTACATGGTGCCGTGATTGGCCTGGACACCTTTGGT
GCATCAGCCCCAGCGGATGTGTTGTACAAACATTTTAATATCACTGCAGAACACGTTGTCGAAGTCGCAAAGGCACTTTA
G

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-336)

Transketolase, pyrimidine binding domain (Transket_pyr)

(357-528)

Transketolase, C-terminal domain (Transketolase_C)

(554-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

49.094

99.399

0.488