Detailed information NTG0055476

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: VPBB_RS01345
• Genome accession: NC_019955
• Coordinates: 282231..283277 (-)
• Length: 348 a.a.
• NCBI ID: WP_254894148.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus BB22OP
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 277231..288277

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VPBB_RS01315 (VPBB_0260)	zapB	277402..277644 (+)	243	WP_005481417.1	cell division protein ZapB	-
VPBB_RS01320 (VPBB_0261)	rraA	277749..278261 (-)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
VPBB_RS01325 (VPBB_0262)	-	278338..279255 (-)	918	WP_005457195.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
VPBB_RS01330 (VPBB_0263)	hslU	279440..280771 (-)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
VPBB_RS01335 (VPBB_0264)	hslV	280795..281346 (-)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
VPBB_RS01340 (VPBB_0265)	ftsN	281510..282055 (-)	546	WP_025537140.1	cell division protein FtsN	-
VPBB_RS01345 (VPBB_0266)	cytR	282231..283277 (-)	1047	WP_254894148.1	DNA-binding transcriptional regulator CytR	Regulator
VPBB_RS01350 (VPBB_0267)	priA	283571..285775 (-)	2205	WP_015296172.1	primosomal protein N'	-
VPBB_RS01355 (VPBB_0268)	rpmE	286070..286291 (+)	222	WP_005457203.1	50S ribosomal protein L31	-
VPBB_RS01360 (VPBB_0269)	rpsJ	286748..287059 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
VPBB_RS01365 (VPBB_0270)	rplC	287074..287703 (+)	630	WP_005456132.1	50S ribosomal protein L3	-

Sequence

Protein

• Length: 348 a.a.
• Molecular weight: 38445.17 Da
• Isoelectric Point: 6.7430

>NTDB_id=55476 VPBB_RS01345 WP_254894148.1 282231..283277(-) (cytR) [Vibrio parahaemolyticus BB22OP]
MTSSWQKFERLNTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVP
DICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEF
APELELPTVHIDNLTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKA
VRKLLELPEPPTAIFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELL
KGHDVHSGSRLLETKLVVRGSAAPPQRA

Nucleotide

• Length: 1047 bp

>NTDB_id=55476 VPBB_RS01345 WP_254894148.1 282231..283277(-) (cytR) [Vibrio parahaemolyticus BB22OP]
ATAACGTCATCTTGGCAAAAATTTGAGAGGTTAAACACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTC
GACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAAAGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTGC
TTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATCTACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCT
GACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGTATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCT
CGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCATTTGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTAC
TGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAGAACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTT
GCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAACCTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACT
TGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACACAGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAG
CCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACAGCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCT
GTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCGATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCA
AGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATCTGTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACT
GCGATCCACCGTTAACAACCATTTCTCAACCTCGTTATGAAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTCCTG
AAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAAACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACG
CGCCTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (181-341)

• Bacterial regulatory proteins, lacI family (LacI) (16-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	95.977	0.871