Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | LZ753_RS04695 | Genome accession | NZ_CP090514 |
| Coordinates | 1106403..1107596 (+) | Length | 397 a.a. |
| NCBI ID | WP_004572891.1 | Uniprot ID | B2I4S3 |
| Organism | Xylella fastidiosa subsp. fastidiosa strain Riv13 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1101403..1112596
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LZ753_RS12050 (LZ753_04670) | - | 1101636..1102808 (-) | 1173 | Protein_910 | anthranilate synthase component I family protein | - |
| LZ753_RS12055 | - | 1102790..1103074 (-) | 285 | WP_118853459.1 | hypothetical protein | - |
| LZ753_RS04675 (LZ753_04675) | - | 1103427..1104233 (+) | 807 | WP_004572888.1 | TatD family hydrolase | - |
| LZ753_RS04680 (LZ753_04680) | - | 1104230..1104397 (+) | 168 | WP_012382564.1 | hypothetical protein | - |
| LZ753_RS04685 (LZ753_04685) | - | 1104447..1105007 (-) | 561 | WP_004572889.1 | HNH endonuclease | - |
| LZ753_RS04690 (LZ753_04690) | - | 1105357..1105830 (-) | 474 | WP_004572890.1 | hypothetical protein | - |
| LZ753_RS04695 (LZ753_04695) | pilA | 1106403..1107596 (+) | 1194 | WP_004572891.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| LZ753_RS04700 (LZ753_04700) | mutY | 1107696..1108745 (+) | 1050 | WP_004572892.1 | A/G-specific adenine glycosylase | - |
| LZ753_RS04705 (LZ753_04705) | - | 1108780..1109052 (+) | 273 | WP_011097829.1 | oxidative damage protection protein | - |
| LZ753_RS04710 (LZ753_04710) | - | 1109106..1109639 (+) | 534 | WP_228446171.1 | DUF2726 domain-containing protein | - |
| LZ753_RS04715 (LZ753_04715) | - | 1109768..1110502 (+) | 735 | WP_004572895.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| LZ753_RS04720 (LZ753_04720) | ruvC | 1110622..1111143 (+) | 522 | WP_011097831.1 | crossover junction endodeoxyribonuclease RuvC | - |
| LZ753_RS04725 (LZ753_04725) | ruvA | 1111229..1111813 (+) | 585 | WP_004572897.1 | Holliday junction branch migration protein RuvA | - |
Sequence
Protein
Download Length: 397 a.a. Molecular weight: 42821.04 Da Isoelectric Point: 8.0970
>NTDB_id=554715 LZ753_RS04695 WP_004572891.1 1106403..1107596(+) (pilA) [Xylella fastidiosa subsp. fastidiosa strain Riv13]
MLSFLRRKKPTNAISDNERSKYSAEEMAAAFPKAPSLDEAPDQGQTSTTPLLSSADQPALLTHSTSSAFTELVISTCNDT
SGASTPTVSVDKPNWRERLRGSLFARNINALFSNNPRLDENLLDEIETALITADVGVSTTNAIVDGLRKRMKAREFADIQ
TLLAALRNELITILRPVSKPLIVKRDALPFVFLVVGVNGVGKTTTIGKLAKWFKRDGYSLMLAAGDTFRAAAVAQLQAWG
ERNSITVIAQKGPNADAASVVYDALQAAKARSIEVLIADTAGRLHTQIGLMNELSKIRRVLGKLDSTAPHEVLMVIDGTT
GQNALSQLRQFHAAVNVTGIVVTKLDGTAKGGVVFTLAREFGIPIHFISIGEQLEDMHFFDPEAFVDALLPKTLGNA
MLSFLRRKKPTNAISDNERSKYSAEEMAAAFPKAPSLDEAPDQGQTSTTPLLSSADQPALLTHSTSSAFTELVISTCNDT
SGASTPTVSVDKPNWRERLRGSLFARNINALFSNNPRLDENLLDEIETALITADVGVSTTNAIVDGLRKRMKAREFADIQ
TLLAALRNELITILRPVSKPLIVKRDALPFVFLVVGVNGVGKTTTIGKLAKWFKRDGYSLMLAAGDTFRAAAVAQLQAWG
ERNSITVIAQKGPNADAASVVYDALQAAKARSIEVLIADTAGRLHTQIGLMNELSKIRRVLGKLDSTAPHEVLMVIDGTT
GQNALSQLRQFHAAVNVTGIVVTKLDGTAKGGVVFTLAREFGIPIHFISIGEQLEDMHFFDPEAFVDALLPKTLGNA
Nucleotide
Download Length: 1194 bp
>NTDB_id=554715 LZ753_RS04695 WP_004572891.1 1106403..1107596(+) (pilA) [Xylella fastidiosa subsp. fastidiosa strain Riv13]
ATGTTAAGCTTTCTACGCCGCAAGAAGCCCACCAATGCCATCAGCGACAACGAGCGGAGCAAATACAGTGCTGAAGAGAT
GGCTGCTGCCTTTCCAAAAGCTCCTTCGTTGGATGAGGCTCCAGACCAAGGGCAAACTAGCACCACGCCATTGCTATCTT
CAGCAGATCAGCCTGCGTTACTGACCCACTCTACGAGTAGTGCCTTTACAGAGCTAGTAATCTCCACTTGCAACGACACA
TCGGGGGCGAGTACCCCAACAGTTTCGGTGGATAAACCCAATTGGCGTGAGCGCCTACGTGGCAGTCTCTTCGCGCGGAA
CATCAATGCTTTATTCTCGAATAACCCGCGTTTGGATGAAAATCTGCTTGATGAGATTGAAACCGCGTTGATTACGGCTG
ATGTAGGCGTGTCTACGACTAATGCAATAGTTGACGGTTTGCGTAAACGTATGAAAGCACGTGAATTCGCTGATATCCAA
ACACTGTTAGCTGCATTACGTAATGAATTAATCACGATACTGCGTCCTGTTTCTAAACCACTGATCGTCAAACGCGATGC
ACTTCCATTTGTGTTTCTTGTTGTAGGTGTCAATGGTGTTGGTAAGACTACAACAATCGGCAAGTTGGCGAAGTGGTTCA
AGAGGGATGGCTACAGCTTGATGTTGGCTGCCGGTGATACCTTCCGTGCTGCCGCTGTCGCGCAGTTACAGGCATGGGGC
GAGCGTAATAGTATTACGGTGATCGCACAAAAAGGACCGAATGCAGATGCTGCTTCGGTAGTCTATGATGCGCTGCAAGC
AGCCAAGGCGCGTAGCATTGAGGTGCTCATCGCCGATACCGCAGGCCGCCTGCATACCCAAATTGGTTTAATGAACGAGT
TGAGCAAAATCCGCCGTGTGCTCGGTAAGCTTGATAGCACCGCACCACATGAAGTACTGATGGTGATTGACGGTACTACT
GGGCAAAATGCGCTTTCGCAATTACGCCAATTTCATGCTGCCGTGAACGTCACTGGTATTGTGGTAACCAAGCTTGATGG
CACTGCCAAGGGCGGGGTAGTCTTCACGTTGGCACGTGAATTTGGCATTCCAATCCACTTCATCAGCATAGGCGAGCAGC
TGGAAGATATGCATTTTTTTGACCCTGAGGCATTCGTAGACGCGCTACTGCCAAAAACATTAGGAAATGCTTAA
ATGTTAAGCTTTCTACGCCGCAAGAAGCCCACCAATGCCATCAGCGACAACGAGCGGAGCAAATACAGTGCTGAAGAGAT
GGCTGCTGCCTTTCCAAAAGCTCCTTCGTTGGATGAGGCTCCAGACCAAGGGCAAACTAGCACCACGCCATTGCTATCTT
CAGCAGATCAGCCTGCGTTACTGACCCACTCTACGAGTAGTGCCTTTACAGAGCTAGTAATCTCCACTTGCAACGACACA
TCGGGGGCGAGTACCCCAACAGTTTCGGTGGATAAACCCAATTGGCGTGAGCGCCTACGTGGCAGTCTCTTCGCGCGGAA
CATCAATGCTTTATTCTCGAATAACCCGCGTTTGGATGAAAATCTGCTTGATGAGATTGAAACCGCGTTGATTACGGCTG
ATGTAGGCGTGTCTACGACTAATGCAATAGTTGACGGTTTGCGTAAACGTATGAAAGCACGTGAATTCGCTGATATCCAA
ACACTGTTAGCTGCATTACGTAATGAATTAATCACGATACTGCGTCCTGTTTCTAAACCACTGATCGTCAAACGCGATGC
ACTTCCATTTGTGTTTCTTGTTGTAGGTGTCAATGGTGTTGGTAAGACTACAACAATCGGCAAGTTGGCGAAGTGGTTCA
AGAGGGATGGCTACAGCTTGATGTTGGCTGCCGGTGATACCTTCCGTGCTGCCGCTGTCGCGCAGTTACAGGCATGGGGC
GAGCGTAATAGTATTACGGTGATCGCACAAAAAGGACCGAATGCAGATGCTGCTTCGGTAGTCTATGATGCGCTGCAAGC
AGCCAAGGCGCGTAGCATTGAGGTGCTCATCGCCGATACCGCAGGCCGCCTGCATACCCAAATTGGTTTAATGAACGAGT
TGAGCAAAATCCGCCGTGTGCTCGGTAAGCTTGATAGCACCGCACCACATGAAGTACTGATGGTGATTGACGGTACTACT
GGGCAAAATGCGCTTTCGCAATTACGCCAATTTCATGCTGCCGTGAACGTCACTGGTATTGTGGTAACCAAGCTTGATGG
CACTGCCAAGGGCGGGGTAGTCTTCACGTTGGCACGTGAATTTGGCATTCCAATCCACTTCATCAGCATAGGCGAGCAGC
TGGAAGATATGCATTTTTTTGACCCTGAGGCATTCGTAGACGCGCTACTGCCAAAAACATTAGGAAATGCTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
42.857 |
89.924 |
0.385 |