Detailed information NTG0554654

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: LZ751_RS04460
• Genome accession: NZ_CP090513
• Coordinates: 1034257..1035693 (-)
• Length: 478 a.a.
• NCBI ID: WP_031345817.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. multiplex strain Red Oak 8
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1029257..1040693

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LZ751_RS04440 (LZ751_04440)	-	1031286..1032479 (-)	1194	Protein_866	toprim domain-containing protein	-
LZ751_RS04450 (LZ751_04450)	-	1032445..1033443 (-)	999	WP_004085391.1	MBL fold metallo-hydrolase	-
LZ751_RS04455 (LZ751_04455)	-	1033574..1034260 (-)	687	WP_012337799.1	TIGR02453 family protein	-
LZ751_RS04460 (LZ751_04460)	sbcB	1034257..1035693 (-)	1437	WP_031345817.1	exodeoxyribonuclease I	Machinery gene
LZ751_RS04465 (LZ751_04465)	-	1035881..1036171 (+)	291	WP_027700686.1	hypothetical protein	-
LZ751_RS04470 (LZ751_04470)	-	1036141..1036995 (+)	855	WP_031345816.1	hypothetical protein	-
LZ751_RS04475 (LZ751_04475)	-	1037918..1039555 (+)	1638	WP_038259951.1	Na+/H+ antiporter	-
LZ751_RS04480 (LZ751_04480)	-	1039930..1040478 (+)	549	WP_004085386.1	hypothetical protein	-

Sequence

Protein

• Length: 478 a.a.
• Molecular weight: 54942.21 Da
• Isoelectric Point: 6.5860

>NTDB_id=554654 LZ751_RS04460 WP_031345817.1 1034257..1035693(-) (sbcB) [Xylella fastidiosa subsp. multiplex strain Red Oak 8]
MPPSFLFYDLETFGQDPRRTRIAQFAAVRTDTQLNVIEEPISFLVKPADDLLPSPYATLITGITPQHAQREGISEVAAFA
HITMQMTQPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYEREWRNGNSRWDLLDMLRLMHALRPEGIHWPTREDGAPSFKL
EHLALANHAREGTAHEALSDVYATISMARKFRAAQPRLWNYALQLRDKRFCANLLDITSIQPVLHISQRYPATQHCAAAV
LPLTTHPHINNRIIVFDLNGDIDTLLRLSAEDIADHLYTPALDLPEGEQRIPLKEVHLNKVPALIAWNHLRASDFTRLGL
NPAMLETKAAQLRACGPDLAEKVRHVFSHTYNTANDADASLYDGFLTEEDRRLLPQLRASPADTLATFEQRLRDPRLIEL
LFRYRARNFPETLSCDEQTRWDTYRRRRLTTDTGLSELTFDQYHAQIAELRITHSQDATKQTLLDQLAAWGSELSRTL

Nucleotide

• Length: 1437 bp

>NTDB_id=554654 LZ751_RS04460 WP_031345817.1 1034257..1035693(-) (sbcB) [Xylella fastidiosa subsp. multiplex strain Red Oak 8]
ATGCCCCCCAGCTTTCTGTTCTACGACTTAGAAACTTTCGGTCAGGACCCCCGTCGTACCCGCATCGCACAGTTTGCCGC
AGTACGGACGGACACCCAATTAAACGTCATCGAAGAACCAATTAGTTTCCTCGTCAAACCCGCCGATGACCTGCTCCCCT
CACCCTACGCCACACTCATCACCGGAATTACCCCGCAACACGCACAACGTGAAGGCATCAGCGAAGTCGCAGCCTTCGCG
CACATTACAATGCAGATGACACAACCACACACCTGCTCCCTCGGCTACAACACGCTACGTTTCGACGACGAATTCATCCG
CTACGGGCTATTCCGTCACTTCTACGACCCATACGAACGCGAGTGGCGCAACGGCAATTCACGGTGGGACCTGCTGGACA
TGCTGCGACTCATGCACGCACTACGCCCAGAAGGCATCCACTGGCCAACACGTGAAGACGGTGCCCCCTCATTCAAACTC
GAACACCTAGCCCTTGCCAACCATGCACGCGAAGGCACAGCACACGAAGCATTATCAGATGTCTATGCCACCATCAGCAT
GGCGCGTAAATTCCGCGCCGCACAACCGCGCCTCTGGAATTACGCACTGCAACTGCGTGACAAACGCTTTTGCGCCAACC
TGCTCGACATCACCTCAATACAACCAGTACTGCATATCTCACAGCGCTATCCTGCCACACAACACTGCGCCGCCGCCGTG
CTGCCACTGACCACACACCCACACATCAACAACCGCATCATTGTTTTCGACTTGAACGGCGACATAGACACACTGCTGCG
CCTGTCTGCAGAAGACATCGCCGACCACCTGTACACCCCAGCCCTGGATTTACCCGAAGGCGAGCAACGTATCCCACTGA
AAGAAGTCCACCTAAACAAAGTACCGGCCCTGATCGCCTGGAACCACCTGCGTGCATCGGACTTCACACGCCTTGGCCTG
AACCCGGCCATGCTAGAAACCAAAGCGGCACAACTGCGCGCATGCGGACCGGATTTGGCCGAAAAAGTCCGCCACGTCTT
CAGCCATACCTACAACACCGCCAACGACGCTGATGCTTCACTGTACGACGGCTTTCTCACCGAAGAGGACCGCCGCCTCC
TGCCACAACTACGCGCCTCCCCTGCTGACACCTTGGCGACGTTCGAACAGCGCCTTCGCGATCCACGTCTCATCGAACTG
CTGTTCCGCTACCGCGCACGTAATTTTCCAGAAACCCTCTCTTGCGACGAACAGACACGCTGGGACACCTATCGGCGACG
CCGTCTGACCACCGACACCGGCCTATCAGAACTCACCTTCGACCAATACCACGCCCAAATTGCGGAATTACGGATAACGC
ACTCCCAAGATGCCACCAAACAGACCCTATTGGACCAACTCGCCGCCTGGGGCTCCGAACTATCCCGCACCCTATGA

Domains

Predicted by InterProScan.

• Exonuclease C-terminal (ExoI_SH3) (206-472)

• Exonuclease (RNase_T) (7-185)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	40.421	99.372	0.402