Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   J8G07_RS15105 Genome accession   NZ_CP072612
Coordinates   3065930..3066829 (-) Length   299 a.a.
NCBI ID   WP_032874887.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain G10     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3060930..3071829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8G07_RS15090 xerC 3061314..3062231 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  J8G07_RS15095 trmFO 3062301..3063608 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  J8G07_RS15100 topA 3063673..3065748 (-) 2076 WP_029325907.1 type I DNA topoisomerase -
  J8G07_RS15105 dprA 3065930..3066829 (-) 900 WP_032874887.1 DNA-processing protein DprA Machinery gene
  J8G07_RS15110 sucD 3066895..3067797 (-) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  J8G07_RS15115 sucC 3067826..3068983 (-) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  J8G07_RS15120 - 3069158..3069439 (-) 282 WP_007409769.1 FlhB-like flagellar biosynthesis protein -
  J8G07_RS15125 - 3069436..3071139 (-) 1704 WP_032874885.1 hypothetical protein -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32853.99 Da        Isoelectric Point: 8.1570

>NTDB_id=554643 J8G07_RS15105 WP_032874887.1 3065930..3066829(-) (dprA) [Bacillus amyloliquefaciens strain G10]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTAPEAIFREIERKNSELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTLLLEKGRKIGIVGTRKPTEDGIKAVGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=554643 J8G07_RS15105 WP_032874887.1 3065930..3066829(-) (dprA) [Bacillus amyloliquefaciens strain G10]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGAATTCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCGTCAAGCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCTGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.569

100

0.706
  dprA Lactococcus lactis subsp. cremoris KW2

42.045

88.294

0.371