Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   J8G07_RS03760 Genome accession   NZ_CP072612
Coordinates   740517..741629 (-) Length   370 a.a.
NCBI ID   WP_007409910.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain G10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 735517..746629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8G07_RS03745 gyrA 735606..738065 (-) 2460 WP_032875298.1 DNA gyrase subunit A -
  J8G07_RS03750 gyrB 738281..740197 (-) 1917 WP_007409911.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  J8G07_RS03755 - 740254..740499 (-) 246 WP_004392908.1 extracellular matrix/biofilm biosynthesis regulator RemA family protein -
  J8G07_RS03760 recF 740517..741629 (-) 1113 WP_007409910.1 DNA replication/repair protein RecF Machinery gene
  J8G07_RS03765 rlbA 741645..741860 (-) 216 WP_004392910.1 ribosome maturation protein RlbA -
  J8G07_RS03770 dnaN 741995..743131 (-) 1137 WP_007409909.1 DNA polymerase III subunit beta -
  J8G07_RS03775 dnaA 743316..744656 (-) 1341 WP_007409908.1 chromosomal replication initiator protein DnaA -
  J8G07_RS03780 rpmH 745276..745410 (+) 135 WP_003178075.1 50S ribosomal protein L34 -
  J8G07_RS03785 rnpA 745565..745915 (+) 351 WP_004392944.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42430.36 Da        Isoelectric Point: 7.0882

>NTDB_id=554599 J8G07_RS03760 WP_007409910.1 740517..741629(-) (recF) [Bacillus amyloliquefaciens strain G10]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGTLVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=554599 J8G07_RS03760 WP_007409910.1 740517..741629(-) (recF) [Bacillus amyloliquefaciens strain G10]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGAGAAAATGCCCAAGGCAAAACCAATTTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAGTCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGTAACGGGGAC
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCTGAGGATTTAAATCTCGTCAAAGGAAGCCCTCAGGTGAGGAGGAGAT
TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACTATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCACAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACGTACGGTTCACAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACAAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTACGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.324

100

0.943