Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   J8G07_RS03530 Genome accession   NZ_CP072612
Coordinates   698822..699112 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain G10     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 693822..704112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8G07_RS03515 - 694043..695368 (-) 1326 WP_087920785.1 G5 and 3D domain-containing protein -
  J8G07_RS03520 - 695503..696270 (-) 768 WP_032872179.1 TatD family hydrolase -
  J8G07_RS03525 metG 696347..698338 (-) 1992 WP_022552471.1 methionine--tRNA ligase -
  J8G07_RS03530 abrB 698822..699112 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  J8G07_RS03535 rsmI 699162..700043 (-) 882 WP_032872176.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  J8G07_RS03540 - 700018..700317 (-) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  J8G07_RS03545 - 700304..701047 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  J8G07_RS03550 yabA 701108..701467 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  J8G07_RS03555 ricT 701482..702309 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  J8G07_RS03560 holB 702312..703301 (-) 990 WP_032872173.1 DNA polymerase III subunit delta' -
  J8G07_RS03565 - 703313..703753 (-) 441 WP_004264730.1 DUF327 family protein -
  J8G07_RS03570 darA 703766..704095 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=554597 J8G07_RS03530 WP_169510469.1 698822..699112(+) (abrB) [Bacillus amyloliquefaciens strain G10]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=554597 J8G07_RS03530 WP_169510469.1 698822..699112(+) (abrB) [Bacillus amyloliquefaciens strain G10]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979