Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   LZ754_RS05025 Genome accession   NZ_CP090511
Coordinates   1149895..1151895 (+) Length   666 a.a.
NCBI ID   WP_004085444.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. multiplex strain Oak 35874     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1144895..1156895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ754_RS05005 (LZ754_05005) - 1145585..1145977 (-) 393 WP_004085448.1 HU family DNA-binding protein -
  LZ754_RS05010 (LZ754_05010) - 1146646..1147140 (+) 495 WP_004085447.1 SgcJ/EcaC family oxidoreductase -
  LZ754_RS05015 (LZ754_05015) msrA 1147244..1147894 (+) 651 WP_004085446.1 peptide-methionine (S)-S-oxide reductase MsrA -
  LZ754_RS05020 (LZ754_05020) - 1148490..1149788 (+) 1299 WP_004085445.1 dicarboxylate/amino acid:cation symporter -
  LZ754_RS05025 (LZ754_05025) recP/tkt 1149895..1151895 (+) 2001 WP_004085444.1 transketolase Machinery gene
  LZ754_RS05030 (LZ754_05030) rsmG 1151945..1152583 (-) 639 WP_027700708.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  LZ754_RS05035 (LZ754_05035) - 1152809..1153402 (-) 594 WP_021358333.1 4'-phosphopantetheinyl transferase superfamily protein -
  LZ754_RS05040 (LZ754_05040) xth 1153530..1154318 (-) 789 WP_027700709.1 exodeoxyribonuclease III -
  LZ754_RS05045 (LZ754_05045) - 1154890..1156560 (-) 1671 Protein_985 Tn3 family transposase -

Sequence

Protein


Download         Length: 666 a.a.        Molecular weight: 72998.55 Da        Isoelectric Point: 6.4755

>NTDB_id=554596 LZ754_RS05025 WP_004085444.1 1149895..1151895(+) (recP/tkt) [Xylella fastidiosa subsp. multiplex strain Oak 35874]
MTKPTRRQLANAIRFLAADAVQAAHSGHPGMPMGMADIAEVLWNDFLRHNPNNPNWFNRDRFVLSNGHGSMLQYALLHLS
GYDLPLDELKRFRQLHSKTAGHPERSETPGIETTTGPLGQGFANAVGFALAEKLLAQRYNRPEHLIVDHRTWVFMGDGCL
MEGISHEAAALAGTWNLGKLICFWDDNNISIDGNTAGWFTEDTPARFEAYGWHVIRDIDGHDAEKIATAIQAAVAQENKP
SLLCCRTVIGFGSPNKAGKESSHGAPLGAEELEATRKMLDWPYGPFEIPSEIYDGWRANGTGMLRQAEWEQAFDNYARQY
PKEAAELTRRSHAELPTDFLSQLDAYIAKVHAAGPCIASRKASQMAIEAFAPLLPELIGGSADLAHSNLTLWKGSQTVVG
DAPNANYAYYGVREFGMSAIANGLALHGGFIPFDATFLVFSDYARNAVRMSALIPAHVIHVYTHDSIGLGEDGPTHQPVE
HLAALRYIPNNDVWRPCDAVESAVAWKAAITRNNGPSCLVFSRQNLPHQPRHDAQLEQIARGGYILADAASSIPDIILIA
TGSEVSLAIEAKKTLDAMQLKTRVVSMPSTNVFERQHPTYRESVLPSKVHKRVAIEAGVTGFWWQYVGLHGAVIGLDTFG
ASAPADVLYKHFNITAEHVVEVAKAL

Nucleotide


Download         Length: 2001 bp        

>NTDB_id=554596 LZ754_RS05025 WP_004085444.1 1149895..1151895(+) (recP/tkt) [Xylella fastidiosa subsp. multiplex strain Oak 35874]
ATGACCAAACCCACACGCCGCCAGTTGGCCAACGCAATCCGTTTTCTTGCAGCTGATGCAGTACAAGCTGCTCATTCTGG
GCACCCGGGCATGCCGATGGGAATGGCAGATATCGCTGAAGTTCTTTGGAACGATTTCCTACGCCATAACCCTAACAACC
CGAACTGGTTTAACCGTGACCGCTTCGTTCTTTCCAACGGTCACGGCTCGATGTTGCAATATGCATTGCTGCATTTAAGT
GGCTATGACCTGCCGTTAGATGAACTCAAGCGATTCCGTCAGCTGCATAGCAAAACAGCTGGTCATCCTGAGCGTAGCGA
GACCCCAGGGATTGAGACGACTACTGGGCCGCTTGGTCAGGGGTTTGCTAACGCAGTGGGTTTTGCCTTGGCCGAGAAAC
TTCTAGCGCAACGCTACAACCGTCCGGAACATCTCATTGTCGATCACCGCACCTGGGTGTTCATGGGCGACGGCTGTCTC
ATGGAAGGTATCTCACATGAAGCAGCCGCGCTGGCGGGTACCTGGAACTTAGGCAAATTGATTTGTTTCTGGGATGACAA
CAACATTTCTATTGATGGCAATACTGCGGGTTGGTTTACCGAAGACACTCCAGCACGATTCGAAGCCTATGGTTGGCATG
TAATCCGCGATATTGATGGCCATGATGCGGAAAAAATCGCAACCGCAATCCAAGCCGCCGTTGCTCAAGAGAACAAGCCC
TCATTGCTATGCTGCCGTACCGTGATCGGATTTGGCTCACCAAATAAAGCAGGTAAAGAATCTTCGCATGGTGCCCCACT
AGGAGCGGAGGAACTGGAGGCCACGCGTAAGATGTTGGATTGGCCATACGGCCCGTTCGAGATTCCGTCCGAGATTTACG
ATGGTTGGCGTGCTAACGGCACAGGCATGCTACGTCAAGCTGAGTGGGAGCAGGCGTTCGACAACTATGCCCGACAGTAT
CCTAAGGAAGCAGCTGAATTAACCCGGCGCTCCCACGCTGAGTTACCTACTGATTTTCTCAGCCAATTGGATGCTTACAT
TGCCAAAGTTCACGCTGCGGGGCCCTGCATTGCTTCCCGTAAAGCATCGCAGATGGCGATTGAAGCATTTGCACCTTTAC
TTCCCGAGTTAATTGGTGGCTCGGCTGACTTGGCACATTCCAATCTAACGTTGTGGAAAGGGAGCCAAACAGTTGTTGGC
GACGCCCCCAACGCCAACTATGCCTATTACGGCGTACGTGAGTTTGGGATGAGTGCCATCGCAAATGGACTTGCATTGCA
TGGCGGCTTTATCCCCTTCGACGCGACATTTCTAGTATTCAGTGATTACGCCCGCAACGCAGTGCGTATGAGTGCATTGA
TCCCAGCACATGTGATTCACGTTTACACACATGATTCAATCGGACTTGGCGAAGACGGTCCAACGCATCAGCCTGTTGAA
CACTTAGCCGCACTGCGCTATATCCCCAACAATGACGTGTGGCGTCCCTGTGACGCAGTTGAATCTGCAGTGGCATGGAA
GGCGGCGATCACTCGCAATAACGGCCCGAGCTGTTTGGTGTTCAGCCGCCAAAACTTGCCGCACCAACCGCGCCATGATG
CACAACTTGAGCAGATTGCACGCGGTGGCTATATCTTGGCTGACGCGGCGAGCAGCATCCCCGACATCATTTTGATCGCG
ACCGGCTCGGAAGTCAGCCTAGCGATCGAAGCGAAAAAGACACTTGATGCGATGCAGCTAAAAACACGCGTGGTCTCGAT
GCCATCGACCAATGTGTTTGAACGTCAGCACCCCACCTACCGTGAGTCGGTCCTCCCATCGAAAGTCCACAAGCGTGTTG
CAATAGAAGCTGGCGTCACTGGTTTTTGGTGGCAGTACGTAGGGTTACATGGTGCCGTGATTGGCCTGGACACCTTTGGT
GCATCAGCCCCAGCGGATGTGTTGTACAAACATTTTAATATCACTGCAGAACACGTTGTCGAAGTCGCAAAGGCACTTTA
G

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(554-659)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-336)

Transketolase, pyrimidine binding domain (Transket_pyr)

(357-528)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

49.094

99.399

0.488