Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LZ754_RS04665 Genome accession   NZ_CP090511
Coordinates   1060407..1061843 (-) Length   478 a.a.
NCBI ID   WP_031345817.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. multiplex strain Oak 35874     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1055407..1066843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ754_RS12300 - 1056096..1057100 (+) 1005 WP_267963003.1 glycoside hydrolase family 3 N-terminal domain-containing protein -
  LZ754_RS04645 (LZ754_04645) - 1057435..1058628 (-) 1194 Protein_907 toprim domain-containing protein -
  LZ754_RS12395 - 1058523..1059593 (-) 1071 WP_326490572.1 MBL fold metallo-hydrolase -
  LZ754_RS04660 (LZ754_04660) - 1059724..1060410 (-) 687 WP_012337799.1 TIGR02453 family protein -
  LZ754_RS04665 (LZ754_04665) sbcB 1060407..1061843 (-) 1437 WP_031345817.1 exodeoxyribonuclease I Machinery gene
  LZ754_RS04670 (LZ754_04670) - 1062031..1062321 (+) 291 WP_027700686.1 hypothetical protein -
  LZ754_RS04675 (LZ754_04675) - 1062291..1063052 (+) 762 WP_234499939.1 hypothetical protein -
  LZ754_RS04680 (LZ754_04680) - 1063928..1065565 (+) 1638 WP_038259951.1 Na+/H+ antiporter -
  LZ754_RS04685 (LZ754_04685) - 1065940..1066488 (+) 549 WP_004085386.1 hypothetical protein -

Sequence

Protein


Download         Length: 478 a.a.        Molecular weight: 54942.21 Da        Isoelectric Point: 6.5860

>NTDB_id=554594 LZ754_RS04665 WP_031345817.1 1060407..1061843(-) (sbcB) [Xylella fastidiosa subsp. multiplex strain Oak 35874]
MPPSFLFYDLETFGQDPRRTRIAQFAAVRTDTQLNVIEEPISFLVKPADDLLPSPYATLITGITPQHAQREGISEVAAFA
HITMQMTQPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYEREWRNGNSRWDLLDMLRLMHALRPEGIHWPTREDGAPSFKL
EHLALANHAREGTAHEALSDVYATISMARKFRAAQPRLWNYALQLRDKRFCANLLDITSIQPVLHISQRYPATQHCAAAV
LPLTTHPHINNRIIVFDLNGDIDTLLRLSAEDIADHLYTPALDLPEGEQRIPLKEVHLNKVPALIAWNHLRASDFTRLGL
NPAMLETKAAQLRACGPDLAEKVRHVFSHTYNTANDADASLYDGFLTEEDRRLLPQLRASPADTLATFEQRLRDPRLIEL
LFRYRARNFPETLSCDEQTRWDTYRRRRLTTDTGLSELTFDQYHAQIAELRITHSQDATKQTLLDQLAAWGSELSRTL

Nucleotide


Download         Length: 1437 bp        

>NTDB_id=554594 LZ754_RS04665 WP_031345817.1 1060407..1061843(-) (sbcB) [Xylella fastidiosa subsp. multiplex strain Oak 35874]
ATGCCCCCCAGCTTTCTGTTCTACGACTTAGAAACTTTCGGTCAGGACCCCCGTCGTACCCGCATCGCACAGTTTGCCGC
AGTACGGACGGACACCCAATTAAACGTCATCGAAGAACCAATTAGTTTCCTCGTCAAACCCGCCGATGACCTGCTCCCCT
CACCCTACGCCACACTCATCACCGGAATTACCCCGCAACACGCACAACGTGAAGGCATCAGCGAAGTCGCAGCCTTCGCG
CACATTACAATGCAGATGACACAACCACACACCTGCTCCCTCGGCTACAACACGCTACGTTTCGACGACGAATTCATCCG
CTACGGGCTATTCCGTCACTTCTACGACCCATACGAACGCGAGTGGCGCAACGGCAATTCACGGTGGGACCTGCTGGACA
TGCTGCGACTCATGCACGCACTACGCCCAGAAGGCATCCACTGGCCAACACGTGAAGACGGTGCCCCCTCATTCAAACTC
GAACACCTAGCCCTTGCCAACCATGCACGCGAAGGCACAGCACACGAAGCATTATCAGATGTCTATGCCACCATCAGCAT
GGCGCGTAAATTCCGCGCCGCACAACCGCGCCTCTGGAATTACGCACTGCAACTGCGTGACAAACGCTTTTGCGCCAACC
TGCTCGACATCACCTCAATACAACCAGTACTGCATATCTCACAGCGCTATCCTGCCACACAACACTGCGCCGCCGCCGTG
CTGCCACTGACCACACACCCACACATCAACAACCGCATCATTGTTTTCGACTTGAACGGCGACATAGACACACTGCTGCG
CCTGTCTGCAGAAGACATCGCCGACCACCTGTACACCCCAGCCCTGGATTTACCCGAAGGCGAGCAACGTATCCCACTGA
AAGAAGTCCACCTAAACAAAGTACCGGCCCTGATCGCCTGGAACCACCTGCGTGCATCGGACTTCACACGCCTTGGCCTG
AACCCGGCCATGCTAGAAACCAAAGCGGCACAACTGCGCGCATGCGGACCGGATTTGGCCGAAAAAGTCCGCCACGTCTT
CAGCCATACCTACAACACCGCCAACGACGCTGATGCTTCACTGTACGACGGCTTTCTCACCGAAGAGGACCGCCGCCTCC
TGCCACAACTACGCGCCTCCCCTGCTGACACCTTGGCGACGTTCGAACAGCGCCTTCGCGATCCACGTCTCATCGAACTG
CTGTTCCGCTACCGCGCACGTAATTTTCCAGAAACCCTCTCTTGCGACGAACAGACACGCTGGGACACCTATCGGCGACG
CCGTCTGACCACCGACACCGGCCTATCAGAACTCACCTTCGACCAATACCACGCCCAAATTGCGGAATTACGGATAACGC
ACTCCCAAGATGCCACCAAACAGACCCTATTGGACCAACTCGCCGCCTGGGGCTCCGAACTATCCCGCACCCTATGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(206-472)

Exonuclease (RNase_T)

(7-185)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

40.421

99.372

0.402