Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   J8G07_RS01965 Genome accession   NZ_CP072612
Coordinates   405194..405631 (+) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain G10     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 400194..410631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8G07_RS01950 - 403054..403416 (-) 363 WP_007409352.1 helix-turn-helix domain-containing protein -
  J8G07_RS01955 hxlA 403648..404283 (+) 636 WP_014416875.1 3-hexulose-6-phosphate synthase -
  J8G07_RS01960 hxlB 404280..404837 (+) 558 WP_032872811.1 6-phospho-3-hexuloisomerase -
  J8G07_RS01965 nucA/comI 405194..405631 (+) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  J8G07_RS01970 nin/comJ 405652..406050 (+) 399 WP_032872809.1 competence protein ComJ Regulator
  J8G07_RS01975 - 406091..406309 (-) 219 Protein_389 family 1 glycosylhydrolase -
  J8G07_RS01985 - 406529..406852 (-) 324 WP_032872805.1 YckD family protein -
  J8G07_RS01990 - 406925..407359 (-) 435 WP_021494203.1 RDD family protein -
  J8G07_RS01995 - 407374..408510 (-) 1137 WP_032872802.1 zinc-dependent alcohol dehydrogenase -
  J8G07_RS02000 - 408575..409777 (-) 1203 WP_032872800.1 GTP-binding protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=554592 J8G07_RS01965 WP_003156588.1 405194..405631(+) (nucA/comI) [Bacillus amyloliquefaciens strain G10]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=554592 J8G07_RS01965 WP_003156588.1 405194..405631(+) (nucA/comI) [Bacillus amyloliquefaciens strain G10]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAAACCGTTCAGAAGAGTGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATTAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641