Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   LZ754_RS00440 Genome accession   NZ_CP090511
Coordinates   116456..117091 (+) Length   211 a.a.
NCBI ID   WP_027700370.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. multiplex strain Oak 35874     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 111456..122091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ754_RS00430 (LZ754_00430) - 113154..114182 (-) 1029 WP_004085534.1 right-handed parallel beta-helix repeat-containing protein -
  LZ754_RS00435 (LZ754_00435) - 114952..115983 (+) 1032 WP_004085533.1 nitronate monooxygenase family protein -
  LZ754_RS00440 (LZ754_00440) dinR/lexA 116456..117091 (+) 636 WP_027700370.1 transcriptional repressor LexA Regulator
  LZ754_RS00445 (LZ754_00445) recA 117273..118316 (+) 1044 WP_027700369.1 recombinase RecA Machinery gene
  LZ754_RS00450 (LZ754_00450) alaS 118805..121459 (+) 2655 WP_038211435.1 alanine--tRNA ligase -
  LZ754_RS00455 (LZ754_00455) csrA 121598..121813 (+) 216 WP_004085529.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23331.79 Da        Isoelectric Point: 6.6096

>NTDB_id=554573 LZ754_RS00440 WP_027700370.1 116456..117091(+) (dinR/lexA) [Xylella fastidiosa subsp. multiplex strain Oak 35874]
MSLSDIQQAILSLITKNINADGVSPSQTEIARAFGFKGVRAVQHHLDVLEQQGMIRRVPGQARGIRLKHLTEVDEVALAL
HSKDVLRLPVLGRVAAGQPIGADIGEDHVVLLDRVFFSPAPDYLLRVQGDSMRDEGIFDGDLIGVHRTQDAHSGQIVVAR
IDDEITVKLLKISKDRIRLLPRNPDFAPIEVRSDQDFAIEGLYCGLLRPNR

Nucleotide


Download         Length: 636 bp        

>NTDB_id=554573 LZ754_RS00440 WP_027700370.1 116456..117091(+) (dinR/lexA) [Xylella fastidiosa subsp. multiplex strain Oak 35874]
ATGAGTTTGAGCGATATTCAGCAGGCAATCCTGTCATTGATTACCAAAAACATCAACGCTGATGGCGTTTCTCCTTCGCA
GACGGAGATCGCGCGTGCATTCGGCTTCAAAGGGGTTCGCGCGGTGCAGCATCACCTTGATGTATTGGAGCAACAGGGGA
TGATTCGCCGCGTCCCTGGACAGGCGCGTGGCATCCGGTTGAAGCATCTTACTGAGGTGGATGAGGTTGCGTTAGCTTTG
CATAGTAAGGATGTGTTGCGCTTGCCAGTGCTCGGTCGCGTTGCGGCTGGTCAGCCGATCGGTGCTGATATCGGTGAGGA
TCACGTGGTGTTGTTGGATCGTGTGTTCTTCTCCCCAGCACCGGATTATCTGTTGAGGGTGCAAGGTGATTCGATGCGCG
ATGAAGGAATTTTCGATGGTGATTTGATCGGCGTACATCGTACGCAGGATGCGCATTCTGGGCAAATTGTGGTGGCGCGC
ATTGATGATGAGATTACCGTCAAATTGTTGAAGATCAGTAAAGACCGGATTCGTTTGCTACCGCGTAATCCTGACTTTGC
ACCGATTGAGGTGAGGTCAGATCAGGATTTCGCCATTGAGGGATTGTATTGCGGTTTGCTGCGCCCCAACCGGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(2-64)

Peptidase S24-like (Peptidase_S24)

(89-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

37.019

98.578

0.365