Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   LZ759_RS04990 Genome accession   NZ_CP090510
Coordinates   1171345..1172538 (+) Length   397 a.a.
NCBI ID   WP_004085429.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. multiplex strain LA-Y3C     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1166345..1177538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ759_RS04970 (LZ759_04970) - 1166515..1167717 (-) 1203 WP_027700718.1 anthranilate synthase component I family protein -
  LZ759_RS04975 (LZ759_04975) - 1168352..1169158 (+) 807 WP_004085432.1 TatD family hydrolase -
  LZ759_RS04980 (LZ759_04980) - 1169369..1169983 (-) 615 WP_004085431.1 HNH endonuclease -
  LZ759_RS04985 (LZ759_04985) - 1170299..1170772 (-) 474 WP_004085430.1 LEA type 2 family protein -
  LZ759_RS04990 (LZ759_04990) pilA 1171345..1172538 (+) 1194 WP_004085429.1 signal recognition particle-docking protein FtsY Machinery gene
  LZ759_RS04995 (LZ759_04995) mutY 1172638..1173687 (+) 1050 WP_004085428.1 A/G-specific adenine glycosylase -
  LZ759_RS05000 (LZ759_05000) - 1173722..1173994 (+) 273 WP_011097829.1 oxidative damage protection protein -
  LZ759_RS05005 (LZ759_05005) - 1174048..1174581 (+) 534 WP_228762585.1 DUF2726 domain-containing protein -
  LZ759_RS05010 (LZ759_05010) - 1174711..1175445 (+) 735 WP_027700720.1 YebC/PmpR family DNA-binding transcriptional regulator -
  LZ759_RS05015 (LZ759_05015) ruvC 1175555..1176076 (+) 522 WP_027700721.1 crossover junction endodeoxyribonuclease RuvC -
  LZ759_RS05020 (LZ759_05020) ruvA 1176162..1176746 (+) 585 WP_004085425.1 Holliday junction branch migration protein RuvA -

Sequence

Protein


Download         Length: 397 a.a.        Molecular weight: 42764.87 Da        Isoelectric Point: 6.7732

>NTDB_id=554538 LZ759_RS04990 WP_004085429.1 1171345..1172538(+) (pilA) [Xylella fastidiosa subsp. multiplex strain LA-Y3C]
MLSFLRLKKPTNAISDNERSKYSAEEMAAAFPKAPSLDEAPDQEQTSTTPLLSSADQPALLTHSTSSAFTELAISTGDDT
SGASTPTVSVDKPNWRERLRGSLFARNINALFSNNPRLDENLLDEIETALITADVGVSTTNAIVDGLRKRMKAREFADIQ
TLLAALRNELITILRPVSKPLIVKRDALPFVFLVVGVNGVGKTTTIGKLAKWFKRDGYSLMLAAGDTFRAAAVAQLQAWG
ERNSITVIAQKGPNADAASVVYDALQAAKARSTEVLIADTAGRLHTQIGLMNELSKIRRVLGKLDSTAPHEVLMVIDGTT
GQNALSQLRQFHAAVNVTGLVVTKLDGTAKGGVVFTLAREFGIPIHFISIGEQLEDMHFFDPEAFVDALLPKTLGNA

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=554538 LZ759_RS04990 WP_004085429.1 1171345..1172538(+) (pilA) [Xylella fastidiosa subsp. multiplex strain LA-Y3C]
ATGTTAAGCTTTCTACGCCTCAAGAAGCCCACCAATGCCATCAGCGACAACGAGCGGAGCAAATACAGTGCTGAAGAGAT
GGCGGCTGCCTTTCCAAAAGCTCCTTCGTTGGATGAGGCTCCAGACCAAGAGCAAACTAGCACCACGCCATTGCTATCTT
CAGCAGATCAGCCTGCGTTACTGACCCACTCTACGAGTAGTGCCTTTACAGAGCTAGCAATCTCCACTGGCGACGACACA
TCGGGGGCGAGTACCCCAACTGTTTCGGTGGATAAACCCAATTGGCGTGAGCGCCTACGTGGCAGTCTCTTCGCGCGGAA
CATCAATGCTTTATTCTCGAATAACCCGCGTTTGGATGAAAATCTGCTTGATGAGATTGAAACCGCGTTGATTACGGCTG
ATGTAGGCGTGTCTACGACTAATGCCATAGTTGACGGTTTGCGTAAACGTATGAAAGCACGTGAATTCGCTGATATCCAA
ACACTGTTAGCTGCATTACGTAATGAATTAATCACGATACTGCGTCCTGTTTCTAAACCACTGATCGTCAAACGCGATGC
ACTTCCATTTGTGTTTCTTGTTGTAGGTGTCAATGGTGTTGGTAAGACCACAACAATCGGCAAGTTGGCGAAGTGGTTCA
AGAGGGATGGCTACAGCTTGATGTTGGCTGCCGGTGATACCTTCCGTGCTGCCGCTGTCGCGCAGTTACAGGCATGGGGC
GAGCGTAATAGTATTACGGTGATCGCACAAAAAGGACCGAATGCAGATGCTGCTTCGGTAGTCTATGATGCGCTGCAAGC
AGCCAAGGCGCGTAGCACCGAGGTGCTCATCGCCGATACCGCAGGCCGCCTGCATACCCAGATTGGTTTAATGAACGAGT
TGAGCAAAATCCGCCGTGTGCTCGGTAAGCTTGATAGCACCGCACCACATGAAGTACTGATGGTGATTGACGGTACTACT
GGGCAAAATGCGCTTTCGCAATTACGCCAATTTCATGCTGCCGTGAACGTCACTGGTCTTGTGGTAACCAAGCTCGATGG
CACTGCCAAGGGCGGGGTAGTCTTCACGTTGGCACGTGAATTTGGCATTCCAATCCACTTCATCAGCATAGGCGAGCAGC
TGGAAGATATGCATTTTTTTGACCCTGAGGCATTCGTAGACGCGCTACTGCCAAAAACATTAGGAAATGCTTAA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(105-170)

SRP54-type protein, GTPase domain (SRP54)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

42.297

89.924

0.38