Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   LZ759_RS04905 Genome accession   NZ_CP090510
Coordinates   1151901..1153901 (+) Length   666 a.a.
NCBI ID   WP_004085444.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. multiplex strain LA-Y3C     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1146901..1158901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ759_RS04885 (LZ759_04885) - 1147591..1147983 (-) 393 WP_004085448.1 HU family DNA-binding protein -
  LZ759_RS04890 (LZ759_04890) - 1148652..1149146 (+) 495 WP_004085447.1 SgcJ/EcaC family oxidoreductase -
  LZ759_RS04895 (LZ759_04895) msrA 1149250..1149900 (+) 651 WP_004085446.1 peptide-methionine (S)-S-oxide reductase MsrA -
  LZ759_RS04900 (LZ759_04900) - 1150496..1151794 (+) 1299 WP_004085445.1 dicarboxylate/amino acid:cation symporter -
  LZ759_RS04905 (LZ759_04905) recP/tkt 1151901..1153901 (+) 2001 WP_004085444.1 transketolase Machinery gene
  LZ759_RS04910 (LZ759_04910) rsmG 1153951..1154589 (-) 639 WP_027700708.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  LZ759_RS04915 (LZ759_04915) - 1154815..1155408 (-) 594 WP_021358333.1 4'-phosphopantetheinyl transferase superfamily protein -
  LZ759_RS04920 (LZ759_04920) xth 1155536..1156324 (-) 789 WP_027700709.1 exodeoxyribonuclease III -
  LZ759_RS04925 (LZ759_04925) - 1156896..1158564 (-) 1669 Protein_959 Tn3 family transposase -

Sequence

Protein


Download         Length: 666 a.a.        Molecular weight: 72998.55 Da        Isoelectric Point: 6.4755

>NTDB_id=554537 LZ759_RS04905 WP_004085444.1 1151901..1153901(+) (recP/tkt) [Xylella fastidiosa subsp. multiplex strain LA-Y3C]
MTKPTRRQLANAIRFLAADAVQAAHSGHPGMPMGMADIAEVLWNDFLRHNPNNPNWFNRDRFVLSNGHGSMLQYALLHLS
GYDLPLDELKRFRQLHSKTAGHPERSETPGIETTTGPLGQGFANAVGFALAEKLLAQRYNRPEHLIVDHRTWVFMGDGCL
MEGISHEAAALAGTWNLGKLICFWDDNNISIDGNTAGWFTEDTPARFEAYGWHVIRDIDGHDAEKIATAIQAAVAQENKP
SLLCCRTVIGFGSPNKAGKESSHGAPLGAEELEATRKMLDWPYGPFEIPSEIYDGWRANGTGMLRQAEWEQAFDNYARQY
PKEAAELTRRSHAELPTDFLSQLDAYIAKVHAAGPCIASRKASQMAIEAFAPLLPELIGGSADLAHSNLTLWKGSQTVVG
DAPNANYAYYGVREFGMSAIANGLALHGGFIPFDATFLVFSDYARNAVRMSALIPAHVIHVYTHDSIGLGEDGPTHQPVE
HLAALRYIPNNDVWRPCDAVESAVAWKAAITRNNGPSCLVFSRQNLPHQPRHDAQLEQIARGGYILADAASSIPDIILIA
TGSEVSLAIEAKKTLDAMQLKTRVVSMPSTNVFERQHPTYRESVLPSKVHKRVAIEAGVTGFWWQYVGLHGAVIGLDTFG
ASAPADVLYKHFNITAEHVVEVAKAL

Nucleotide


Download         Length: 2001 bp        

>NTDB_id=554537 LZ759_RS04905 WP_004085444.1 1151901..1153901(+) (recP/tkt) [Xylella fastidiosa subsp. multiplex strain LA-Y3C]
ATGACCAAACCCACACGCCGCCAGTTGGCCAACGCAATCCGTTTTCTTGCAGCTGATGCAGTACAAGCTGCTCATTCTGG
GCACCCGGGCATGCCGATGGGAATGGCAGATATCGCTGAAGTTCTTTGGAACGATTTCCTACGCCATAACCCTAACAACC
CGAACTGGTTTAACCGTGACCGCTTCGTTCTTTCCAACGGTCACGGCTCGATGTTGCAATATGCATTGCTGCATTTAAGT
GGCTATGACCTGCCGTTAGATGAACTCAAGCGATTCCGTCAGCTGCATAGCAAAACAGCTGGTCATCCTGAGCGTAGCGA
GACCCCAGGGATTGAGACGACTACTGGGCCGCTTGGTCAGGGGTTTGCTAACGCAGTGGGTTTTGCCTTGGCCGAGAAAC
TTCTAGCGCAACGCTACAACCGTCCGGAACATCTCATTGTCGATCACCGCACCTGGGTGTTCATGGGCGACGGCTGTCTC
ATGGAAGGTATCTCACATGAAGCAGCCGCGCTGGCGGGTACCTGGAACTTAGGCAAATTGATTTGTTTCTGGGATGACAA
CAACATTTCTATTGATGGCAATACTGCGGGTTGGTTTACCGAAGACACTCCAGCACGATTCGAAGCCTATGGTTGGCATG
TAATCCGCGATATTGATGGCCATGATGCGGAAAAAATCGCAACCGCAATCCAAGCCGCCGTTGCTCAAGAGAACAAGCCC
TCATTGCTATGCTGCCGTACCGTGATCGGATTTGGCTCACCAAATAAAGCAGGTAAAGAATCTTCGCATGGTGCCCCACT
AGGAGCGGAGGAACTGGAGGCCACGCGTAAGATGTTGGATTGGCCATACGGCCCGTTCGAGATTCCGTCCGAGATTTACG
ATGGTTGGCGTGCTAACGGCACAGGCATGCTACGTCAAGCTGAGTGGGAGCAGGCGTTCGACAACTATGCCCGACAGTAT
CCTAAGGAAGCAGCTGAATTAACCCGGCGCTCCCACGCTGAGTTACCTACTGATTTTCTCAGCCAATTGGATGCTTACAT
TGCCAAAGTTCACGCTGCGGGGCCCTGCATTGCTTCCCGTAAAGCATCGCAGATGGCGATTGAAGCATTTGCACCTTTAC
TTCCCGAGTTAATTGGTGGCTCGGCTGACTTGGCACATTCCAATCTAACGTTGTGGAAAGGGAGCCAAACAGTTGTTGGC
GACGCCCCCAACGCCAACTATGCCTATTACGGCGTACGTGAGTTTGGGATGAGTGCCATCGCAAATGGACTTGCATTGCA
TGGCGGCTTTATCCCCTTCGACGCGACATTTCTAGTATTCAGTGATTACGCCCGCAACGCAGTGCGTATGAGTGCATTGA
TCCCAGCACATGTGATTCACGTTTACACACATGATTCAATCGGACTTGGCGAAGACGGTCCAACGCATCAGCCTGTTGAA
CACTTAGCCGCACTGCGCTATATCCCCAACAATGACGTGTGGCGTCCCTGTGACGCAGTTGAATCTGCAGTGGCATGGAA
GGCGGCGATCACTCGCAATAACGGCCCGAGCTGTTTGGTGTTCAGCCGCCAAAACTTGCCGCACCAACCGCGCCATGATG
CACAACTTGAGCAGATTGCACGCGGTGGCTATATCTTGGCTGACGCGGCGAGCAGCATCCCCGACATCATTTTGATCGCG
ACCGGCTCGGAAGTCAGCCTAGCGATCGAAGCGAAAAAGACACTTGATGCGATGCAGCTAAAAACACGCGTGGTCTCGAT
GCCATCGACCAATGTGTTTGAACGTCAGCACCCCACCTACCGTGAGTCGGTCCTCCCATCGAAAGTCCACAAGCGTGTTG
CAATAGAAGCTGGCGTCACTGGTTTTTGGTGGCAGTACGTAGGGTTACATGGTGCCGTGATTGGCCTGGACACCTTTGGT
GCATCAGCCCCAGCGGATGTGTTGTACAAACATTTTAATATCACTGCAGAACACGTTGTCGAAGTCGCAAAGGCACTTTA
G

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(554-659)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-336)

Transketolase, pyrimidine binding domain (Transket_pyr)

(357-528)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

49.094

99.399

0.488