Detailed information NTG0554535

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: LZ759_RS04560
• Genome accession: NZ_CP090510
• Coordinates: 1061913..1063349 (-)
• Length: 478 a.a.
• NCBI ID: WP_071869568.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. multiplex strain LA-Y3C
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1056913..1068349

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LZ759_RS04530 (LZ759_04530)	-	1057852..1058124 (+)	273	WP_004085396.1	DUF1778 domain-containing protein	-
LZ759_RS04535 (LZ759_04535)	-	1058127..1058606 (+)	480	WP_021358673.1	GNAT family N-acetyltransferase	-
LZ759_RS04540 (LZ759_04540)	-	1058942..1060135 (-)	1194	Protein_885	toprim domain-containing protein	-
LZ759_RS04550 (LZ759_04550)	-	1060101..1061099 (-)	999	WP_004085391.1	MBL fold metallo-hydrolase	-
LZ759_RS04555 (LZ759_04555)	-	1061230..1061916 (-)	687	WP_071869569.1	TIGR02453 family protein	-
LZ759_RS04560 (LZ759_04560)	sbcB	1061913..1063349 (-)	1437	WP_071869568.1	exodeoxyribonuclease I	Machinery gene
LZ759_RS04565 (LZ759_04565)	-	1063537..1064790 (+)	1254	WP_171946769.1	hypothetical protein	-
LZ759_RS04570 (LZ759_04570)	-	1065724..1067361 (+)	1638	WP_071869573.1	Na+/H+ antiporter	-
LZ759_RS04575 (LZ759_04575)	-	1067736..1068284 (+)	549	WP_004085386.1	hypothetical protein	-

Sequence

Protein

• Length: 478 a.a.
• Molecular weight: 54915.15 Da
• Isoelectric Point: 6.5860

>NTDB_id=554535 LZ759_RS04560 WP_071869568.1 1061913..1063349(-) (sbcB) [Xylella fastidiosa subsp. multiplex strain LA-Y3C]
MPPSFLFYDLETFGQDPRRTRIAQFAAVRTDTQLNVIEEPISFLVKPADDLLPSPYATLITGITPQHAQREGINEAAAFA
HIAMQMTQPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYEREWRNGNSRWDLLDMLRLMHALRPEGIHWPTREDGATSFKL
EHLALANHAREGTAHEALSDVYATISMARKFRAAQPRLWNYALQLRDKRFCANLLDITSIQPVLHISQRYPATQHCAAAV
LPLTTHPHINNRIIVFDLNGDIDTLLRLSAEDIADHLYTPALDLPEGEQRIPLKEVHLNKVPALIAWNHLRASDFTRLGL
NPAMLETKAAQLRACGPDLAEKVRHVFSHTYNTANDADASLYDGFLTEEDRRLLPQLRASPADTLATFEQRLRDPRLIEL
LFRYRARNFPETLSCDEQTRWDTYRRRRLTTDTGLSELTFDQYHAQIAELRITHSQDATKQTLLDQLAAWGSELSRTL

Nucleotide

• Length: 1437 bp

>NTDB_id=554535 LZ759_RS04560 WP_071869568.1 1061913..1063349(-) (sbcB) [Xylella fastidiosa subsp. multiplex strain LA-Y3C]
ATGCCCCCCAGCTTTCTGTTCTACGACTTAGAAACTTTCGGTCAGGACCCACGTCGTACCCGCATCGCACAGTTTGCCGC
AGTACGGACGGACACCCAATTAAACGTCATCGAAGAACCAATTAGTTTCCTCGTCAAACCCGCCGATGACCTGCTCCCCT
CACCCTACGCCACACTCATCACCGGGATCACTCCGCAACACGCACAACGTGAAGGCATCAATGAAGCAGCAGCCTTCGCG
CACATTGCAATGCAGATGACACAACCACACACCTGCTCCCTCGGCTACAACACCCTACGTTTCGACGACGAATTCATCCG
CTACGGGCTATTCCGTCACTTCTACGACCCATACGAACGCGAGTGGCGCAACGGCAATTCACGGTGGGACCTGCTGGACA
TGCTGCGACTCATGCACGCACTACGCCCAGAAGGCATCCACTGGCCAACACGTGAAGACGGTGCCACCTCATTCAAACTC
GAACACCTAGCCCTTGCCAACCATGCACGCGAAGGCACAGCACACGAAGCATTATCAGATGTCTATGCCACCATCAGCAT
GGCGCGTAAATTCCGCGCCGCACAACCGCGCCTCTGGAATTACGCACTGCAACTGCGTGACAAACGCTTTTGCGCCAACC
TGCTCGACATCACCTCAATACAACCAGTACTGCATATCTCACAGCGCTATCCTGCCACACAACACTGCGCCGCCGCCGTG
CTGCCACTGACCACACACCCACACATCAACAACCGCATCATTGTTTTCGACTTGAACGGCGACATAGACACACTGCTGCG
CCTGTCTGCAGAAGACATCGCCGACCACCTGTACACCCCAGCCCTGGATTTACCCGAAGGCGAGCAACGTATCCCACTGA
AAGAAGTCCACCTAAACAAAGTACCGGCCCTGATCGCCTGGAACCACCTGCGTGCATCGGACTTCACACGCCTTGGCCTG
AACCCGGCCATGCTAGAAACCAAAGCGGCACAACTGCGCGCATGCGGACCGGATTTGGCCGAAAAAGTCCGCCACGTCTT
CAGCCATACCTACAACACCGCCAACGACGCTGATGCTTCACTGTACGACGGCTTTCTCACCGAAGAGGACCGCCGCCTCC
TGCCACAACTACGCGCCTCCCCTGCTGACACCTTGGCGACGTTCGAACAGCGCCTTCGCGATCCACGTCTCATCGAACTG
CTGTTCCGCTACCGCGCACGTAATTTTCCAGAAACCCTCTCTTGCGACGAACAGACACGCTGGGACACCTATCGGCGACG
CCGTCTGACCACCGACACCGGCCTATCAGAACTCACCTTCGACCAATACCACGCCCAAATTGCGGAATTACGGATAACGC
ACTCCCAAGATGCCACCAAACAGACCCTATTGGACCAACTCGCCGCCTGGGGCTCCGAACTATCCCGCACCCTATGA

Domains

Predicted by InterProScan.

• Exonuclease C-terminal (ExoI_SH3) (206-472)

• Exonuclease (RNase_T) (7-185)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	40.632	99.372	0.404