Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   LZ758_RS06400 Genome accession   NZ_CP090508
Coordinates   1356220..1358220 (-) Length   666 a.a.
NCBI ID   WP_038229324.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. morus strain Riv11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1351220..1363220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ758_RS06380 (LZ758_06380) - 1351568..1353225 (+) 1658 Protein_1249 Tn3 family transposase -
  LZ758_RS06385 (LZ758_06385) xth 1353797..1354585 (+) 789 WP_027700709.1 exodeoxyribonuclease III -
  LZ758_RS06390 (LZ758_06390) - 1354713..1355306 (+) 594 WP_038229328.1 4'-phosphopantetheinyl transferase superfamily protein -
  LZ758_RS06395 (LZ758_06395) rsmG 1355532..1356170 (+) 639 WP_038229326.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  LZ758_RS06400 (LZ758_06400) recP/tkt 1356220..1358220 (-) 2001 WP_038229324.1 transketolase Machinery gene
  LZ758_RS06405 (LZ758_06405) - 1358328..1359626 (-) 1299 WP_004085445.1 dicarboxylate/amino acid:cation symporter -
  LZ758_RS06410 (LZ758_06410) msrA 1360222..1360872 (-) 651 WP_004085446.1 peptide-methionine (S)-S-oxide reductase MsrA -
  LZ758_RS06415 (LZ758_06415) - 1360976..1361470 (-) 495 WP_004085447.1 SgcJ/EcaC family oxidoreductase -
  LZ758_RS06420 (LZ758_06420) - 1362139..1362531 (+) 393 WP_004085448.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 666 a.a.        Molecular weight: 72992.50 Da        Isoelectric Point: 6.3865

>NTDB_id=554479 LZ758_RS06400 WP_038229324.1 1356220..1358220(-) (recP/tkt) [Xylella fastidiosa subsp. morus strain Riv11]
MTKPTRRQLANAIRFLAADAVQAAHSGHPGMPMGMADIAEVLWNDFLRHNPNNPNWFNRDRFVLSNGHGSMLQYALLHLS
GYDLPLDELKRFRQLHSKTAGHPERSETPGIETTTGPLGQGFANAVGFALAEKLLAQRYNRPEHLIVDHRTWVFMGDGCL
MEGISHEAAALAGTWNLGKLICFWDDNNISIDGNTAGWFTEDTPARFEAYGWHVIRDIDGHDAEKIATAIQAAVAQENKP
SLLCCRTVIGFGSPNKAGKESSHGAPLGAEELEATRKMLDWPYGPFEIPSEIYDGWRANGTGMLRQAEWEQAFDNYARQY
PKEAAELTRRSHAELPTDFLSQLDAYIAKVHAAGPCIASRKASQMAIEAFAPLLPELIGGSADLAHSNLTLWKGSQTVVG
DSPNANYAYYGVREFGMSAIANGLALHGGFIPFDATFLVFSDYARNAVRMSALIPAHVIHVYTHDSIGLGEDGPTHQPVE
HLAALRYIPNNDVWRPCDAVESAVAWKAAITRNNGPSCLVFSRQNLPHQPRHDAQLEQIARGGYILADAASSIPDIILIA
TGSEVSLAIEAKKTLDAMQLKTRVVSMPSTNVFERQDPTYRESVLPSKVHKRVAIEAGVTGFWWQYVGLHGAVIGLDTFG
ASAPADVLYKHFNITAEHVVEVAKAL

Nucleotide


Download         Length: 2001 bp        

>NTDB_id=554479 LZ758_RS06400 WP_038229324.1 1356220..1358220(-) (recP/tkt) [Xylella fastidiosa subsp. morus strain Riv11]
ATGACCAAACCCACACGCCGCCAGTTGGCCAACGCAATCCGTTTCCTTGCAGCTGATGCAGTACAAGCTGCTCATTCTGG
GCACCCGGGCATGCCGATGGGAATGGCAGATATCGCTGAAGTTCTTTGGAACGATTTCCTACGCCATAACCCTAACAACC
CGAACTGGTTTAACCGTGACCGCTTCGTTCTTTCCAACGGTCACGGCTCGATGTTGCAATATGCATTGCTGCATTTAAGT
GGCTATGACCTGCCGTTAGATGAACTCAAGCGATTCCGTCAGCTGCATAGCAAAACAGCTGGTCATCCTGAGCGTAGCGA
GACCCCAGGGATTGAGACGACTACTGGGCCGCTTGGTCAGGGGTTTGCTAACGCAGTGGGTTTTGCCTTGGCCGAGAAAC
TTCTAGCGCAACGCTACAACCGTCCGGAACATCTCATTGTCGATCACCGCACCTGGGTGTTCATGGGCGACGGCTGTCTC
ATGGAAGGTATCTCACATGAAGCAGCCGCGCTGGCGGGTACCTGGAACTTAGGCAAATTGATTTGTTTCTGGGATGACAA
CAACATTTCTATTGATGGCAATACTGCGGGTTGGTTTACCGAAGACACTCCAGCACGATTCGAAGCCTATGGTTGGCATG
TAATCCGCGATATTGATGGCCATGATGCGGAAAAAATCGCAACCGCAATCCAAGCCGCCGTTGCTCAAGAGAACAAGCCC
TCATTGCTATGCTGCCGTACCGTGATCGGATTTGGCTCACCAAATAAAGCAGGTAAAGAATCTTCGCATGGTGCCCCACT
AGGAGCGGAGGAACTGGAGGCCACGCGTAAGATGTTGGATTGGCCATACGGCCCGTTCGAGATTCCGTCCGAGATTTACG
ATGGTTGGCGTGCTAACGGCACAGGCATGCTACGTCAAGCTGAGTGGGAGCAGGCGTTTGACAACTATGCCCGACAGTAT
CCTAAGGAAGCAGCTGAATTAACCCGGCGCTCCCACGCTGAGTTACCTACTGATTTTCTCAGCCAATTAGATGCTTACAT
TGCCAAAGTTCACGCTGCGGGGCCCTGCATTGCTTCCCGTAAAGCATCGCAGATGGCGATTGAAGCATTTGCACCTTTAC
TTCCCGAGTTAATTGGTGGCTCGGCTGACTTGGCACATTCCAATCTAACGTTGTGGAAAGGGAGCCAAACAGTTGTTGGC
GACTCCCCCAACGCAAACTATGCCTATTACGGCGTACGTGAGTTTGGGATGAGTGCCATCGCAAATGGACTTGCATTGCA
TGGCGGCTTTATCCCCTTCGACGCGACATTTCTAGTATTCAGTGATTACGCCCGCAACGCAGTGCGTATGAGTGCATTGA
TCCCAGCACATGTGATTCACGTTTACACACATGATTCAATCGGACTTGGCGAAGACGGTCCAACGCATCAGCCTGTTGAA
CACTTAGCCGCACTGCGCTATATCCCCAACAATGACGTGTGGCGTCCCTGTGACGCAGTTGAATCTGCAGTAGCATGGAA
GGCGGCGATCACTCGCAATAACGGCCCGAGCTGTTTGGTGTTCAGCCGCCAAAACTTGCCGCACCAACCGCGCCATGATG
CACAACTTGAGCAGATTGCACGCGGTGGCTATATCTTGGCTGACGCTGCGAGCAGCATCCCAGACATCATTTTGATCGCG
ACCGGCTCGGAAGTCAGCCTAGCGATTGAAGCGAAAAAGACACTTGATGCGATGCAGCTAAAAACACGCGTGGTCTCGAT
GCCATCGACCAATGTGTTTGAACGTCAGGACCCCACCTACCGTGAGTCGGTCCTTCCATCGAAAGTCCACAAGCGTGTTG
CAATAGAAGCTGGCGTCACTGGTTTTTGGTGGCAATACGTAGGGTTACATGGTGCCGTGATTGGCCTGGACACCTTTGGT
GCATCAGCCCCAGCGGATGTGTTGTACAAACATTTTAATATCACTGCAGAACACGTTGTCGAAGTCGCAAAGGCACTTTA
G

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(357-528)

Transketolase, C-terminal domain (Transketolase_C)

(554-659)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

49.245

99.399

0.489