Detailed information NTG0554440

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: LZ757_RS10020
• Genome accession: NZ_CP090506
• Coordinates: 2123819..2126296 (-)
• Length: 825 a.a.
• NCBI ID: WP_234056436.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. morus strain Riv19
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2118819..2131296

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LZ757_RS09995 (LZ757_09995)	-	2118855..2119532 (+)	678	WP_234056269.1	contractile injection system protein, VgrG/Pvc8 family	-
LZ757_RS10000 (LZ757_10000)	lpxK	2119948..2120967 (-)	1020	WP_038230156.1	tetraacyldisaccharide 4'-kinase	-
LZ757_RS10005 (LZ757_10005)	msbA	2120964..2122712 (-)	1749	WP_004089264.1	lipid A export permease/ATP-binding protein MsbA	-
LZ757_RS10010 (LZ757_10010)	-	2122730..2123167 (-)	438	WP_004089267.1	biopolymer transporter ExbD	-
LZ757_RS10015 (LZ757_10015)	exbB	2123172..2123834 (-)	663	WP_004085189.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
LZ757_RS10020 (LZ757_10020)	comA	2123819..2126296 (-)	2478	WP_234056436.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
LZ757_RS10025 (LZ757_10025)	lolD	2126644..2127366 (-)	723	WP_038230153.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
LZ757_RS10030 (LZ757_10030)	-	2127359..2128600 (-)	1242	WP_038230151.1	lipoprotein-releasing ABC transporter permease subunit	-
LZ757_RS10035 (LZ757_10035)	-	2128626..2129078 (-)	453	WP_038230149.1	hypothetical protein	-
LZ757_RS10040 (LZ757_10040)	-	2129029..2129277 (-)	249	WP_004089280.1	succinate dehydrogenase assembly factor 2	-
LZ757_RS10045 (LZ757_10045)	-	2129398..2130183 (-)	786	WP_004089282.1	succinate dehydrogenase iron-sulfur subunit	-

Sequence

Protein

• Length: 825 a.a.
• Molecular weight: 90849.93 Da
• Isoelectric Point: 9.5754

>NTDB_id=554440 LZ757_RS10020 WP_234056436.1 2123819..2126296(-) (comA) [Xylella fastidiosa subsp. morus strain Riv19]
MDDMKPEQRHMLQRCWVDVLSVIRHATFLRYLAFPALLPSAVALLLGCLAALTLPRLPPVWVLWIFLFVGVMLAVVVRRV
AWCGVVLFGFANCCLHGQFGLRHQLSFALEGRDLVLRGRIVSLPVPETRRTRFLLRVDTDQDQEPALRGRLLQLSWYDEN
KAVAPGPRSALHAGSVWQLHVRLRAPHSLMNPGGFDSERYALAQGIVATGYVRTPTMARELAAATGINAWRERMSARIAD
AVLLEASVYLRALALGDTRGLSQQDWEVLRATGLTHLIAISGFHVGMVAGACALLVSLLWRVFPHLAWRWPRPLAMALIA
VPAAAGYTVLAGASLPTVRTALMIGIVALARLTRRRAMPGHVLGLALLVVLVWDPLAILSAGFWLSFAGVAWLMWCMQDG
HAAPCRGFLSAQGVATLGLLPFTVALFGQVSFVGPLANLIAIPLWTFVVVPLALLGTALEALVPGWGSPMWRLGGNFFQW
SWQLFEYLAQTDFALWWLPESDGVALGLALLGAFWLLLPRGMPGKWLALLLWLPLLWPERERPRPGEFEMQMLDVGQGLS
IVVRTSGHTLLYDAGPAVNDGFDAGERVVVPALRASGIRRLDALVASHADSDHVGGLPAVLKAYPVDISYAPPDAPLDVE
RRCSAGDSWLWDGVQFRFLHPAPHSRYLGNESSCVLRIDTRWGSALLTGDIGKVVERGLLSQDRESVRADVVVVPHHGSA
GSSSLGFVRAVNARLALVSSGDGNRFGHPRCSVVESWSETADVLLTAHSGAVRIWVGQQGLQLRERRVWRRRFWDAVERR
RSAAILSATEDVSKERRRNETCWNW

Nucleotide

• Length: 2478 bp

>NTDB_id=554440 LZ757_RS10020 WP_234056436.1 2123819..2126296(-) (comA) [Xylella fastidiosa subsp. morus strain Riv19]
ATGGACGATATGAAACCCGAGCAGCGACACATGTTGCAGCGATGTTGGGTTGACGTGTTAAGTGTGATCCGGCACGCAAC
GTTCCTGCGTTACCTCGCGTTTCCGGCGTTGTTGCCGAGTGCTGTTGCGTTGCTGCTGGGTTGTCTTGCTGCACTCACCT
TGCCGCGATTACCGCCCGTATGGGTGTTGTGGATTTTTCTGTTTGTCGGAGTAATGCTCGCTGTTGTCGTGCGCCGTGTT
GCTTGGTGCGGTGTGGTGTTGTTTGGTTTTGCTAACTGTTGCTTGCATGGTCAGTTTGGTTTGCGACATCAATTGTCGTT
CGCGTTGGAGGGGCGTGATCTGGTGTTACGTGGTCGGATCGTTTCTTTGCCGGTTCCAGAGACCAGGCGTACACGTTTCT
TGTTGCGTGTGGATACCGATCAAGATCAGGAACCAGCGCTGCGTGGTCGACTGCTGCAGTTATCCTGGTATGACGAGAAT
AAGGCGGTAGCACCGGGGCCACGCAGTGCATTGCATGCTGGATCTGTATGGCAGCTGCACGTGCGTCTGCGTGCGCCGCA
CAGTTTGATGAATCCCGGAGGTTTCGACAGCGAGCGTTATGCCCTAGCCCAGGGGATTGTTGCGACCGGTTACGTACGTA
CGCCGACGATGGCACGTGAGCTTGCGGCAGCCACTGGCATCAATGCTTGGCGGGAACGGATGTCTGCGCGTATTGCTGAT
GCGGTGTTGTTGGAAGCGTCGGTGTATTTACGTGCGTTGGCCTTGGGTGATACCCGGGGTTTGTCTCAACAGGATTGGGA
AGTATTGCGCGCTACAGGGCTGACGCATTTGATTGCGATCTCGGGGTTCCATGTCGGTATGGTCGCTGGTGCCTGTGCGT
TGCTTGTGTCGTTGCTGTGGCGAGTTTTCCCACATTTGGCTTGGCGTTGGCCGCGGCCACTCGCTATGGCACTCATTGCG
GTACCGGCCGCAGCCGGCTACACCGTCCTGGCTGGGGCGTCACTGCCCACAGTGAGAACCGCTTTGATGATCGGCATCGT
CGCATTGGCGCGCCTCACTCGGCGTCGTGCCATGCCGGGTCATGTCCTGGGGCTTGCCTTGCTTGTCGTACTTGTTTGGG
ATCCATTAGCCATTCTTAGTGCTGGCTTCTGGCTCAGCTTTGCCGGTGTCGCTTGGTTAATGTGGTGTATGCAAGACGGT
CATGCCGCGCCTTGTCGTGGCTTCTTATCGGCACAAGGTGTTGCAACCCTTGGGTTATTACCATTCACCGTGGCTTTATT
TGGTCAGGTTTCGTTTGTTGGGCCTTTGGCTAACTTGATTGCGATTCCGTTATGGACCTTTGTCGTTGTACCGCTGGCGT
TGTTAGGGACTGCGCTGGAAGCGTTAGTGCCAGGGTGGGGTAGCCCCATGTGGCGTTTGGGGGGGAATTTTTTCCAATGG
AGTTGGCAGCTATTCGAATACTTGGCACAGACTGATTTCGCATTGTGGTGGTTGCCGGAATCTGATGGTGTTGCATTGGG
GTTGGCCTTGCTGGGAGCGTTTTGGTTGCTGTTACCACGCGGTATGCCTGGTAAGTGGTTGGCGCTGTTGCTGTGGTTGC
CTTTGTTGTGGCCTGAGCGTGAGCGTCCCCGCCCCGGGGAGTTTGAGATGCAGATGCTGGACGTGGGGCAAGGACTGTCG
ATTGTGGTGCGTACTTCAGGCCATACGTTGTTGTACGACGCAGGTCCAGCAGTGAATGATGGTTTCGATGCCGGTGAGCG
TGTTGTGGTGCCGGCATTACGTGCCAGTGGCATCCGTCGCTTGGATGCATTGGTGGCTAGTCATGCTGATAGTGATCACG
TCGGAGGTTTGCCCGCGGTCCTGAAGGCTTATCCGGTTGATATCAGCTACGCTCCTCCGGATGCTCCACTCGACGTTGAG
CGCCGTTGCAGTGCTGGGGACAGTTGGCTGTGGGATGGAGTCCAGTTTCGTTTCTTACATCCTGCACCGCATTCGAGGTA
TTTAGGTAACGAGTCCAGTTGTGTATTGCGTATCGACACGCGCTGGGGCAGTGCTTTGTTGACGGGTGACATCGGCAAAG
TGGTCGAACGTGGTTTATTGAGTCAGGATCGTGAGAGTGTACGTGCCGATGTGGTGGTCGTACCGCATCATGGGAGCGCC
GGTTCTTCCTCGCTTGGGTTTGTCCGTGCGGTTAATGCGCGGTTAGCTTTGGTATCCAGTGGTGATGGTAACCGCTTCGG
TCATCCGCGCTGTTCGGTGGTGGAGAGCTGGAGTGAAACGGCAGATGTGTTGCTTACTGCGCATAGCGGCGCAGTACGGA
TTTGGGTTGGACAGCAGGGTCTGCAGTTACGTGAACGCCGTGTTTGGCGTCGTCGATTCTGGGATGCGGTCGAACGTCGC
CGATCCGCTGCTATCCTATCCGCCACTGAAGATGTATCCAAAGAGCGTCGGAGAAACGAGACATGCTGGAACTGGTAA

Domains

Predicted by InterProScan.

• Competence protein (Competence) (253-521)

• Metallo-beta-lactamase superfamily (Lactamase_B) (554-722)

• Domain of unknown function (DUF4131) (DUF4131) (59-215)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Ralstonia pseudosolanacearum GMI1000	37.59	100	0.378