Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LZ755_RS10045 Genome accession   NZ_CP090504
Coordinates   2123256..2123918 (-) Length   220 a.a.
NCBI ID   WP_004085189.1    Uniprot ID   Q9PEE9
Organism   Xylella fastidiosa subsp. morus strain Riv25     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2118256..2128918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ755_RS10025 (LZ755_10025) - 2118939..2119616 (+) 678 WP_234056269.1 contractile injection system protein, VgrG/Pvc8 family -
  LZ755_RS10030 (LZ755_10030) lpxK 2120032..2121051 (-) 1020 WP_038230156.1 tetraacyldisaccharide 4'-kinase -
  LZ755_RS10035 (LZ755_10035) msbA 2121048..2122796 (-) 1749 WP_004089264.1 lipid A export permease/ATP-binding protein MsbA -
  LZ755_RS10040 (LZ755_10040) - 2122814..2123251 (-) 438 WP_004089267.1 biopolymer transporter ExbD -
  LZ755_RS10045 (LZ755_10045) exbB 2123256..2123918 (-) 663 WP_004085189.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LZ755_RS10050 (LZ755_10050) comA 2123903..2126380 (-) 2478 WP_234056436.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LZ755_RS10055 (LZ755_10055) lolD 2126728..2127450 (-) 723 WP_038230153.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  LZ755_RS10060 (LZ755_10060) - 2127443..2128684 (-) 1242 WP_038230151.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24000.41 Da        Isoelectric Point: 8.9727

>NTDB_id=554381 LZ755_RS10045 WP_004085189.1 2123256..2123918(-) (exbB) [Xylella fastidiosa subsp. morus strain Riv25]
MLELVKAGGWPMLPLLMLGVVALAIVLERLWTLRRNEVLPSGLGREVREWVRRGKLDQNHLESLRRNSPLGALLAAALDV
KGGVREMIRERIEDTGRHLVHRMERFLNALGTIASAGPLLGLLGTVVGMIQMFLGILDYGVGDVNQLAGGIGKALVCTAT
GMIIAIPALIFHRYFKGRITGYVIEMEQEAMLLLDAIDGLQIAIQGRNAEVAHPNAVTKD

Nucleotide


Download         Length: 663 bp        

>NTDB_id=554381 LZ755_RS10045 WP_004085189.1 2123256..2123918(-) (exbB) [Xylella fastidiosa subsp. morus strain Riv25]
ATGCTGGAACTGGTAAAGGCTGGCGGCTGGCCGATGTTGCCGCTGTTGATGTTAGGTGTTGTTGCATTGGCGATTGTGCT
TGAAAGGCTGTGGACTCTGCGTCGTAATGAGGTATTGCCGTCGGGGCTGGGTCGGGAGGTTCGTGAGTGGGTGAGGCGTG
GCAAATTGGACCAAAATCATCTTGAGTCTCTGCGCCGTAATTCTCCGCTTGGTGCGCTATTGGCCGCCGCTTTGGATGTA
AAAGGTGGCGTACGTGAAATGATTCGTGAACGTATTGAGGATACAGGGCGCCATCTGGTGCATCGCATGGAGCGTTTTCT
GAATGCACTCGGTACGATTGCTTCTGCAGGTCCTTTACTTGGTTTGCTAGGTACTGTGGTCGGTATGATTCAAATGTTCC
TGGGGATTCTCGATTATGGCGTGGGCGATGTGAATCAGCTTGCTGGAGGGATTGGCAAGGCATTGGTTTGCACTGCTACA
GGTATGATTATTGCGATTCCCGCTCTGATTTTTCATCGTTATTTCAAGGGGCGAATTACTGGGTACGTGATTGAGATGGA
GCAAGAGGCAATGCTCTTGCTGGATGCGATTGATGGTCTTCAGATTGCTATTCAAGGAAGAAATGCCGAAGTGGCGCACC
CCAATGCTGTCACCAAGGATTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PEE9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

48.744

90.455

0.441