Detailed information NTG0554325

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: LXM91_RS17610
• Genome accession: NZ_CP090477
• Coordinates: 3574532..3575662 (-)
• Length: 376 a.a.
• NCBI ID: WP_039253522.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain W0101
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3569532..3580662

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LXM91_RS17580 (LXM91_17580)	-	3570375..3570779 (-)	405	WP_003151203.1	Rrf2 family transcriptional regulator	-
LXM91_RS17585 (LXM91_17585)	ureC	3570921..3572630 (-)	1710	WP_039253528.1	urease subunit alpha	-
LXM91_RS17590 (LXM91_17590)	ureB	3572627..3573001 (-)	375	WP_012118652.1	urease subunit beta	-
LXM91_RS17595 (LXM91_17595)	ureA	3572998..3573315 (-)	318	WP_007407581.1	urease subunit gamma	-
LXM91_RS17600 (LXM91_17600)	-	3573669..3573857 (-)	189	WP_015418407.1	CsbD family protein	-
LXM91_RS17605 (LXM91_17605)	-	3573931..3574410 (-)	480	WP_039253524.1	hypothetical protein	-
LXM91_RS17610 (LXM91_17610)	rapC	3574532..3575662 (-)	1131	WP_039253522.1	tetratricopeptide repeat protein	Regulator
LXM91_RS17615 (LXM91_17615)	moaA	3575853..3576878 (-)	1026	WP_039253519.1	GTP 3',8-cyclase MoaA	-
LXM91_RS17620 (LXM91_17620)	fdhD	3576896..3577684 (-)	789	WP_017418742.1	formate dehydrogenase accessory sulfurtransferase FdhD	-
LXM91_RS17625 (LXM91_17625)	-	3577779..3577943 (-)	165	WP_007407587.1	hypothetical protein	-
LXM91_RS17630 (LXM91_17630)	-	3578029..3578709 (-)	681	WP_039253514.1	VWA domain-containing protein	-
LXM91_RS17635 (LXM91_17635)	-	3579018..3579704 (-)	687	WP_015418411.1	VWA domain-containing protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44932.05 Da
• Isoelectric Point: 5.3243

>NTDB_id=554325 LXM91_RS17610 WP_039253522.1 3574532..3575662(-) (rapC) [Bacillus amyloliquefaciens strain W0101]
MTAYEIPSSQVGVKINKWYKHILAFQAADAIKLKEEIDEDIQRMEEDQLLLLYYQLISYRHHIMLDYVKPECTEQSQIQY
SELQKTIESTDSISGLSEYYFHLFRGMYEFDHNNYVAAISFYRKAEKLLSFVEDDIERAEFHFKMSEVFYVMKQTHFSMN
HGIQALDTYMKHDFYRVRRIQCHFVISGNYIDCKNYDKALEHLDEALRLSLLEGQPRLIGSSLYNLGNCYAEKRDLDEAA
RYFRKAVPVFEEHQLEQLPKALFSLTHTLFRLHDDQAALTYYERGVMIAKERGDRFSLEKYKFLQALYLESLNMELIHEV
FDYMNEKSLYVYIEDFALEAAVYTSAHEQYKEAAYFYEKAIRMRENIQKEQCLYDI

Nucleotide

• Length: 1131 bp

>NTDB_id=554325 LXM91_RS17610 WP_039253522.1 3574532..3575662(-) (rapC) [Bacillus amyloliquefaciens strain W0101]
ATGACCGCATACGAGATTCCGTCATCTCAAGTTGGAGTCAAGATCAACAAATGGTACAAGCACATTTTAGCGTTTCAAGC
GGCTGATGCCATAAAGCTGAAAGAGGAAATTGATGAGGATATACAACGTATGGAGGAAGACCAGCTGCTGCTGTTATATT
ATCAGCTGATCAGCTACCGCCATCATATTATGCTTGATTACGTCAAGCCGGAATGCACCGAACAATCACAGATTCAGTAC
AGCGAGCTGCAAAAGACGATCGAAAGCACGGACAGCATATCGGGACTGTCTGAGTATTATTTCCATTTGTTCAGAGGGAT
GTATGAATTCGATCACAATAACTATGTTGCGGCTATTTCTTTTTACCGGAAAGCGGAAAAACTCCTTTCATTTGTCGAGG
ATGATATAGAGAGGGCGGAATTCCATTTCAAGATGTCTGAAGTGTTTTATGTCATGAAGCAGACTCATTTTTCCATGAAT
CACGGGATTCAAGCGCTGGATACGTATATGAAACACGATTTCTACAGAGTGCGGAGAATTCAATGCCATTTCGTCATCTC
AGGAAACTACATCGACTGCAAAAACTACGACAAAGCGCTTGAGCATTTAGACGAAGCCCTCCGCCTTTCTTTGCTTGAAG
GACAGCCCCGCCTGATCGGGTCTTCGCTTTACAATCTGGGGAATTGTTATGCTGAAAAGCGGGATCTGGATGAAGCGGCC
CGGTACTTTAGAAAAGCGGTTCCCGTTTTTGAAGAGCATCAGCTTGAACAGCTTCCGAAGGCGCTGTTCAGCTTAACGCA
CACCCTTTTCAGGCTGCATGATGACCAAGCGGCCCTTACCTATTATGAAAGAGGGGTCATGATCGCGAAAGAACGGGGCG
ATCGATTCAGTTTAGAGAAGTATAAGTTTTTACAAGCGCTTTATTTGGAGTCGCTCAATATGGAGTTAATCCATGAAGTG
TTTGACTATATGAATGAAAAATCGCTGTATGTGTATATTGAAGATTTCGCCTTGGAGGCCGCCGTTTACACAAGCGCACA
TGAGCAATATAAAGAAGCGGCGTATTTTTATGAAAAAGCGATTCGCATGAGAGAAAACATTCAAAAAGAACAGTGTTTAT
ACGATATATAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (192-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	42.105	100	0.426
rapF	Bacillus subtilis subsp. subtilis str. 168	40.267	99.734	0.402