Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   J8F85_RS14200 Genome accession   NZ_CP072566
Coordinates   2908974..2909603 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain WG5::TT12A     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2903974..2914603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8F85_RS14185 (J8F85_14070) helD 2904216..2906270 (-) 2055 WP_001295354.1 DNA helicase IV -
  J8F85_RS14190 (J8F85_14075) yccF 2906393..2906839 (+) 447 WP_001261235.1 YccF domain-containing protein -
  J8F85_RS14195 (J8F85_14080) yccS 2906849..2909011 (+) 2163 WP_000875061.1 YccS family putative transporter -
  J8F85_RS14200 (J8F85_14085) sxy/tfoX 2908974..2909603 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  J8F85_RS14205 (J8F85_14090) sulA 2909822..2910331 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  J8F85_RS14210 (J8F85_14095) ompA 2910688..2911728 (+) 1041 WP_000750416.1 porin OmpA -
  J8F85_RS14215 (J8F85_14100) matP 2911804..2912256 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  J8F85_RS14220 (J8F85_14105) ycbZ 2912442..2914202 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=554325 J8F85_RS14200 WP_000839153.1 2908974..2909603(-) (sxy/tfoX) [Escherichia coli strain WG5::TT12A]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=554325 J8F85_RS14200 WP_000839153.1 2908974..2909603(-) (sxy/tfoX) [Escherichia coli strain WG5::TT12A]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1