Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   LXM91_RS15955 Genome accession   NZ_CP090477
Coordinates   3217156..3219474 (-) Length   772 a.a.
NCBI ID   WP_039253856.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain W0101     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3212156..3224474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXM91_RS15945 (LXM91_15945) cysI 3213430..3215145 (-) 1716 WP_039253860.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit -
  LXM91_RS15950 (LXM91_15950) - 3215173..3216981 (-) 1809 WP_007410019.1 assimilatory sulfite reductase (NADPH) flavoprotein subunit -
  LXM91_RS15955 (LXM91_15955) helD 3217156..3219474 (-) 2319 WP_039253856.1 RNA polymerase recycling motor HelD Machinery gene
  LXM91_RS15960 (LXM91_15960) - 3219646..3220254 (-) 609 WP_039253855.1 trimeric intracellular cation channel family protein -
  LXM91_RS15965 (LXM91_15965) - 3220477..3221277 (+) 801 WP_015418210.1 zinc-dependent metalloprotease -
  LXM91_RS15970 (LXM91_15970) - 3221311..3221730 (-) 420 WP_039253854.1 disulfide oxidoreductase -
  LXM91_RS15975 (LXM91_15975) - 3221720..3222391 (-) 672 WP_012118444.1 DsbA family protein -

Sequence

Protein


Download         Length: 772 a.a.        Molecular weight: 88088.98 Da        Isoelectric Point: 5.9093

>NTDB_id=554313 LXM91_RS15955 WP_039253856.1 3217156..3219474(-) (helD) [Bacillus amyloliquefaciens strain W0101]
MAKRDKEWKEEQERINFVMKELEQKQTHLEASSGGLKQDIVGLRKTFWDDVTVNMDDAHEAAETFSSIKQQAEMLSERER
THRLQYRQLQKIQKLKTSPYFGRVDFTEKGESSSERIYIGLTSLMDENNEQFLIYDWRAPISSLYYQYSPGKARYEVPEE
TIEGDITLKRQFIIKNGTLKAMFNTDMTIGDEMLQEVLSGHSGQHMKNIVSTIQKEQNEIIRDEKSKYLIVQGAAGSGKT
SAALQRAAYLLYRGRGVLDARQIVLFSPNILFNSYVSAVLPELGEENMEQATFQEYIIRRLGRKFDCESPYEQLEYCLTE
QNQDALSVRLAAIAYKASSAFESMIDRYAGSLSGSGLMCKQISFRGDILISKERIEAYFYSLDQQLPIPNRAELTAEWLL
AEISALEKKERKKEWVLQESELLDKEDYAEVYQTLKKQAADDDEPAFDDHQREQRLLGAIIVGKAFKPIKQAVRRLGFLD
IKRMYLRLFSDWGADEKPDHWESIGALTRNAFAERSLPYEDAAPYLYLQDLLEGKRKNTQMKHVFIDEAQDYSPFQLTYI
QSIFPAAKMTVLGDVSQSIYAHTITGPSSLAGCFRNGAEKYVSLKRTYRSTRQIVEFTKALLADGNDIEPFNRNGEKPRV
LRTDTENARQEQLADTIQELRQKGWETVAVICKTAAEAKKVFQAVSAESGVRLINKENQPFQKGVCVIPVYLAKGIEFDA
VIAADASAAQYKSEHDRKLLYTACTRAMHHLTVLSPGEPSPFIKEVPAGLFV

Nucleotide


Download         Length: 2319 bp        

>NTDB_id=554313 LXM91_RS15955 WP_039253856.1 3217156..3219474(-) (helD) [Bacillus amyloliquefaciens strain W0101]
ATGGCAAAACGTGATAAAGAGTGGAAAGAAGAGCAGGAAAGAATCAATTTTGTCATGAAGGAACTGGAACAGAAACAAAC
TCATCTTGAAGCCTCATCGGGCGGATTGAAGCAGGATATTGTCGGGCTGAGAAAAACGTTTTGGGATGATGTCACCGTGA
ATATGGATGACGCCCATGAAGCGGCTGAGACATTTTCAAGCATTAAACAGCAGGCAGAAATGCTTTCAGAACGTGAACGG
ACGCATCGGCTTCAATACCGGCAGCTTCAAAAAATCCAAAAGCTGAAAACCTCTCCTTACTTCGGCCGTGTCGATTTTAC
GGAAAAAGGGGAGTCTTCTTCCGAGCGGATTTATATCGGGCTGACTTCTTTGATGGATGAAAACAACGAGCAATTTCTCA
TTTATGATTGGCGCGCGCCCATCTCATCTCTTTACTATCAATATTCCCCGGGAAAAGCCCGCTATGAAGTTCCCGAAGAA
ACGATAGAGGGAGACATCACACTGAAGCGGCAGTTTATCATTAAAAACGGGACGCTTAAAGCGATGTTTAACACGGATAT
GACGATTGGTGACGAAATGCTGCAAGAGGTGCTGAGTGGGCATTCCGGACAGCATATGAAAAACATCGTGTCAACCATCC
AAAAAGAACAGAACGAAATCATCCGGGATGAAAAAAGCAAATATCTCATTGTTCAGGGAGCCGCCGGAAGCGGGAAAACA
TCCGCGGCGCTTCAGCGGGCCGCTTACTTGCTGTACCGCGGTCGCGGGGTGCTTGATGCCCGTCAGATTGTATTGTTTTC
CCCGAACATTTTGTTCAACAGTTATGTTTCCGCCGTATTGCCGGAATTGGGAGAAGAGAATATGGAGCAGGCCACCTTTC
AGGAATATATCATCCGCCGGCTCGGACGAAAGTTTGATTGTGAAAGCCCGTACGAGCAGCTTGAATATTGCCTGACTGAA
CAAAATCAGGACGCACTTTCTGTAAGGCTTGCAGCCATTGCTTACAAAGCGTCATCAGCTTTCGAGTCCATGATTGACCG
CTACGCCGGCTCGCTTTCCGGCTCGGGTCTGATGTGTAAACAGATCAGCTTCCGGGGAGACATCCTGATTTCAAAAGAAC
GGATTGAAGCCTATTTTTATTCGCTTGATCAGCAGCTGCCGATTCCGAACAGAGCGGAGCTGACAGCGGAATGGCTTCTC
GCGGAAATCAGCGCTCTCGAAAAAAAGGAGCGTAAGAAGGAATGGGTCTTGCAGGAGAGCGAGCTGCTTGATAAGGAAGA
CTATGCTGAGGTTTATCAAACACTCAAGAAGCAGGCGGCAGATGATGATGAACCTGCATTTGACGACCATCAGCGCGAAC
AGCGGCTGCTTGGCGCCATTATTGTCGGCAAAGCCTTTAAACCGATTAAGCAGGCCGTCAGACGGCTCGGCTTTCTCGAT
ATAAAACGGATGTATCTCCGGCTGTTTTCAGACTGGGGAGCTGATGAAAAGCCCGATCATTGGGAGAGCATCGGCGCTTT
GACCAGAAACGCATTTGCAGAACGGTCACTTCCGTATGAAGATGCCGCTCCGTATCTGTATTTGCAGGATCTGTTAGAAG
GAAAAAGAAAAAACACACAAATGAAGCACGTCTTCATTGATGAAGCGCAGGATTATTCTCCATTTCAGCTGACGTATATT
CAAAGCATCTTCCCAGCTGCAAAGATGACGGTGCTCGGTGATGTCAGCCAGTCGATTTATGCCCACACCATTACGGGCCC
TTCTTCCCTCGCCGGCTGCTTTCGCAATGGTGCAGAAAAGTATGTCAGCCTGAAGCGGACTTACAGATCGACGCGGCAGA
TTGTTGAATTTACGAAAGCGCTGCTGGCTGACGGTAATGACATTGAGCCATTTAACCGGAACGGGGAAAAACCGCGTGTT
TTGCGGACGGATACAGAAAATGCGCGGCAGGAACAATTGGCGGATACAATCCAGGAGCTCAGACAAAAAGGCTGGGAGAC
GGTCGCCGTCATCTGCAAAACGGCCGCGGAAGCCAAAAAAGTGTTTCAGGCGGTCAGCGCCGAGAGCGGTGTCCGCTTGA
TCAATAAAGAAAACCAGCCTTTTCAAAAAGGGGTATGCGTCATTCCCGTTTATTTGGCAAAAGGCATTGAGTTTGACGCC
GTCATTGCTGCTGACGCCTCTGCTGCCCAGTACAAAAGCGAACATGACCGTAAGCTGTTATATACGGCCTGTACGCGCGC
GATGCATCATCTGACCGTATTGTCTCCGGGAGAACCCTCTCCTTTTATTAAAGAAGTGCCCGCCGGCTTATTCGTGTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_19)

(217-581)

UvrD-like helicase C-terminal domain (UvrD_C)

(602-687)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(705-753)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

66.667

99.87

0.666