Detailed information    

insolico Bioinformatically predicted

Overview

Name   htrA   Type   Regulator
Locus tag   LXM91_RS15695 Genome accession   NZ_CP090477
Coordinates   3164274..3165620 (-) Length   448 a.a.
NCBI ID   WP_039253922.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain W0101     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3159274..3170620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXM91_RS15670 (LXM91_15670) - 3159384..3160208 (-) 825 WP_012118397.1 ABC transporter ATP-binding protein -
  LXM91_RS15675 (LXM91_15675) - 3160364..3160801 (-) 438 WP_015418176.1 YusW family protein -
  LXM91_RS15680 (LXM91_15680) - 3160920..3162701 (-) 1782 WP_039253926.1 M3 family oligoendopeptidase -
  LXM91_RS15685 (LXM91_15685) - 3162834..3163673 (+) 840 WP_039253925.1 oxidoreductase -
  LXM91_RS15690 (LXM91_15690) - 3163763..3164227 (+) 465 WP_007410071.1 Dps family protein -
  LXM91_RS15695 (LXM91_15695) htrA 3164274..3165620 (-) 1347 WP_039253922.1 trypsin-like peptidase domain-containing protein Regulator
  LXM91_RS15700 (LXM91_15700) - 3165897..3166574 (+) 678 WP_003151813.1 response regulator transcription factor -
  LXM91_RS15705 (LXM91_15705) - 3166571..3167926 (+) 1356 WP_039253918.1 HAMP domain-containing sensor histidine kinase -
  LXM91_RS15710 (LXM91_15710) spxO 3167954..3168118 (-) 165 WP_003151811.1 anti-adapter protein SpxO -
  LXM91_RS15715 (LXM91_15715) - 3168297..3169172 (+) 876 WP_039253915.1 TetR/AcrR family transcriptional regulator -
  LXM91_RS15720 (LXM91_15720) fumC 3169209..3170597 (-) 1389 WP_003151808.1 class II fumarate hydratase -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 47203.72 Da        Isoelectric Point: 4.9962

>NTDB_id=554308 LXM91_RS15695 WP_039253922.1 3164274..3165620(-) (htrA) [Bacillus amyloliquefaciens strain W0101]
MNDHRDDGRSRDQSDLSHTEQNRNEQQEPELLEGPVSKEAENETAAGTEFEKTAAVKKEKKRRAAWLSPILGGIIGGGLV
LGIVPNLPSEQHKTEAVSDTKQVQSSNFTSTPLKNTSSVADMVEALEPAIVGVSNYQASQSSQFGLDGGSSSETESGTGS
GVIFKKDGEKAYIITNNHVVEGANKLSVTLYNGKTETAKLVGKDAISDLAVLEISSSNVKKAASFGDSSKLRIADKVIAI
GNPLGQQFSGTVTQGVISGLNRTVDAVTSQGTVEMNVIQTDAAINPGNSGGPLINSSGQVIGINSMKVSENGVESLGFAI
PSNDVEPIVDQLLAKGKVERPFLGVQMIDMAQVPETYQENTLGLFGDQLSKGVYVKEVQSGSPAAKAGIKSNDVIVQLNG
KDVGSSADIRQILYNQLKIGDKTTVQVLRSGSKKTLNVTLTKQTESAS

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=554308 LXM91_RS15695 WP_039253922.1 3164274..3165620(-) (htrA) [Bacillus amyloliquefaciens strain W0101]
ATGAATGATCATCGAGATGACGGCAGAAGCCGCGATCAGTCAGATCTTTCACATACGGAACAAAACAGAAATGAACAGCA
GGAGCCCGAGCTGCTCGAAGGGCCCGTCTCGAAAGAAGCGGAAAACGAGACGGCGGCCGGTACGGAATTTGAAAAAACGG
CTGCCGTGAAAAAAGAAAAAAAACGGAGAGCCGCTTGGCTGAGCCCGATTTTAGGCGGCATTATCGGCGGCGGCCTCGTG
CTTGGCATTGTGCCAAACCTGCCGAGTGAGCAGCATAAGACAGAAGCCGTTTCTGATACGAAACAAGTTCAGTCTTCGAA
TTTTACGTCAACGCCTTTGAAAAATACCTCAAGCGTAGCGGATATGGTAGAAGCTTTGGAGCCTGCGATTGTCGGAGTGT
CCAACTACCAAGCTTCGCAAAGCAGCCAGTTCGGACTTGACGGCGGTTCAAGCTCTGAAACGGAGAGCGGCACGGGGTCA
GGCGTCATCTTCAAAAAAGACGGCGAAAAAGCGTACATCATTACAAACAACCATGTCGTAGAAGGTGCGAACAAACTGTC
GGTCACTCTTTACAATGGGAAAACCGAAACGGCAAAGCTTGTCGGAAAGGATGCCATCAGTGACTTGGCTGTATTGGAAA
TCAGCTCGTCCAATGTCAAAAAAGCGGCCAGCTTCGGGGATTCCTCCAAGCTCCGCATTGCCGATAAAGTGATTGCCATC
GGCAACCCGCTCGGCCAGCAGTTTTCCGGCACCGTCACACAAGGTGTCATCAGCGGGCTGAACAGAACGGTAGACGCCGT
TACATCCCAAGGCACAGTGGAAATGAACGTGATTCAGACGGATGCGGCGATTAACCCCGGAAACAGCGGCGGCCCGTTAA
TCAACTCAAGCGGCCAAGTTATCGGGATCAACAGCATGAAAGTCAGTGAAAACGGCGTGGAATCACTCGGCTTTGCCATT
CCGAGCAATGATGTAGAACCGATAGTCGACCAGCTGCTTGCAAAAGGAAAAGTCGAGCGCCCATTTTTAGGTGTGCAGAT
GATTGACATGGCGCAAGTGCCGGAAACTTATCAGGAAAACACGCTCGGACTGTTCGGCGACCAGCTGTCTAAGGGTGTTT
ACGTAAAAGAAGTGCAGTCCGGCTCGCCGGCTGCGAAAGCGGGCATCAAATCAAATGACGTCATTGTACAATTGAACGGC
AAAGATGTCGGCAGCAGCGCCGATATCAGACAGATCTTATATAATCAGCTGAAAATCGGCGATAAAACGACTGTTCAAGT
TCTCAGAAGCGGAAGCAAAAAGACGCTGAACGTCACATTAACGAAACAAACCGAAAGCGCAAGCTGA

Domains

Predicted by InterProScan.

PDZ domain (PDZ_2)

(341-440)

Peptidase family M50 (Peptidase_M50)

(343-446)

Trypsin-like peptidase domain (Trypsin_2)

(159-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

41.162

88.393

0.364