Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   J6600_RS17600 Genome accession   NZ_CP072563
Coordinates   3606697..3607842 (+) Length   381 a.a.
NCBI ID   WP_209387690.1    Uniprot ID   -
Organism   Bacillus sp. LJBV19     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3601697..3612842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6600_RS17580 (J6600_17580) - 3602172..3602888 (-) 717 WP_007407631.1 Crp/Fnr family transcriptional regulator -
  J6600_RS17585 (J6600_17585) narK 3602986..3604176 (-) 1191 WP_007407632.1 nitrate transporter NarK -
  J6600_RS17590 (J6600_17590) argS 3604310..3605980 (-) 1671 WP_014419127.1 arginine--tRNA ligase -
  J6600_RS17595 (J6600_17595) - 3605977..3606405 (-) 429 WP_014419128.1 DUF1934 family protein -
  J6600_RS17600 (J6600_17600) rapF 3606697..3607842 (+) 1146 WP_209387690.1 tetratricopeptide repeat protein Regulator
  J6600_RS17605 (J6600_17605) - 3607826..3607945 (+) 120 WP_021494790.1 PhrC/PhrF family phosphatase-inhibitory pheromone -
  J6600_RS17610 (J6600_17610) - 3608143..3608346 (+) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  J6600_RS17615 (J6600_17615) - 3608360..3608563 (+) 204 WP_007407641.1 hypothetical protein -
  J6600_RS17620 (J6600_17620) - 3608598..3608783 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  J6600_RS17625 (J6600_17625) - 3608970..3609251 (+) 282 WP_007407643.1 hypothetical protein -
  J6600_RS17630 (J6600_17630) - 3609295..3609807 (+) 513 WP_007614439.1 stage II sporulation protein M -
  J6600_RS17635 (J6600_17635) - 3610398..3610616 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  J6600_RS17640 (J6600_17640) speB 3610769..3611641 (-) 873 WP_160183093.1 agmatinase -
  J6600_RS17645 (J6600_17645) speE 3611700..3612530 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45609.70 Da        Isoelectric Point: 4.5797

>NTDB_id=554266 J6600_RS17600 WP_209387690.1 3606697..3607842(+) (rapF) [Bacillus sp. LJBV19]
MASVLSSSAIGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSELLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNTAIARQYHDKGISYAEEAEDSLYIVEYEFLESLYVGEPDEEAI
MECFDFLRDKLMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=554266 J6600_RS17600 WP_209387690.1 3606697..3607842(+) (rapF) [Bacillus sp. LJBV19]
GTGGCGAGTGTTTTATCGTCTTCAGCGATTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTACGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCTGAGCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAGCAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAAGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGACTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATACGGCCATAGCCAGACAATATCATGACAAAGGGATATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATAGTCGAGTATGAATTTTTAGAATCTTTATATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATTGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAAGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(189-253)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.478

100

0.785
  rapC Bacillus subtilis subsp. subtilis str. 168

56.842

99.738

0.567