Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   LXM91_RS09035 Genome accession   NZ_CP090477
Coordinates   1833341..1833961 (-) Length   206 a.a.
NCBI ID   WP_003154004.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain W0101     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1828341..1838961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXM91_RS09000 (LXM91_09000) - 1829204..1829638 (+) 435 WP_003154017.1 dUTP diphosphatase -
  LXM91_RS09005 (LXM91_09005) - 1829727..1829834 (-) 108 Protein_1723 DUF4177 domain-containing protein -
  LXM91_RS09010 (LXM91_09010) - 1830046..1830867 (+) 822 WP_039251404.1 poly-gamma-glutamate hydrolase family protein -
  LXM91_RS09015 (LXM91_09015) - 1830976..1831125 (+) 150 WP_007410334.1 hypothetical protein -
  LXM91_RS09020 (LXM91_09020) - 1831112..1831942 (+) 831 WP_007410333.1 prohibitin family protein -
  LXM91_RS09025 (LXM91_09025) - 1831970..1832419 (-) 450 WP_003154009.1 YndM family protein -
  LXM91_RS09030 (LXM91_09030) - 1832573..1833001 (+) 429 WP_015417546.1 hypothetical protein -
  LXM91_RS09035 (LXM91_09035) dinR/lexA 1833341..1833961 (-) 621 WP_003154004.1 transcriptional repressor LexA Regulator
  LXM91_RS09040 (LXM91_09040) yneA 1834118..1834429 (+) 312 WP_003154001.1 cell division suppressor protein YneA -
  LXM91_RS09045 (LXM91_09045) - 1834445..1835095 (+) 651 WP_003153998.1 recombinase family protein -
  LXM91_RS09050 (LXM91_09050) - 1835164..1835397 (+) 234 WP_003153997.1 DUF896 domain-containing protein -
  LXM91_RS09055 (LXM91_09055) recP/tkt 1835564..1837567 (+) 2004 WP_007611727.1 transketolase Machinery gene
  LXM91_RS09060 (LXM91_09060) sirA 1837719..1838165 (+) 447 WP_003153995.1 sporulation inhibitor of replication protein SirA -
  LXM91_RS09065 (LXM91_09065) - 1838251..1838469 (+) 219 WP_003153994.1 YneF family protein -
  LXM91_RS09070 (LXM91_09070) - 1838543..1838716 (-) 174 WP_012117647.1 aspartyl-phosphate phosphatase Spo0E family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23055.65 Da        Isoelectric Point: 5.3816

>NTDB_id=554264 LXM91_RS09035 WP_003154004.1 1833341..1833961(-) (dinR/lexA) [Bacillus amyloliquefaciens strain W0101]
MTKLSKRQLDILRFIKEEVKTKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDPTKPRAIEVLDEEEVHIPKSQ
VVNVPVIGKVTAGIPITAVENIDEYFPLPDRMVPPGEHVFMLEIMGESMIDAGIFDKDYVIVKQQNTANNGEIVVAMTED
DEATVKRFYKEDNYVRLQPENPTMEPIILQNVSILGKVIGVFRAVH

Nucleotide


Download         Length: 621 bp        

>NTDB_id=554264 LXM91_RS09035 WP_003154004.1 1833341..1833961(-) (dinR/lexA) [Bacillus amyloliquefaciens strain W0101]
ATGACGAAGCTATCAAAAAGGCAGCTTGATATCCTGCGTTTTATTAAAGAAGAGGTAAAAACGAAAGGATATCCGCCTTC
TGTAAGAGAGATAGGAGAAGCAGTAGGACTGGCTTCCAGTTCAACCGTGCACGGCCATTTGGCGCGGCTGGAGACAAAAG
GCCTGATCAGACGGGACCCAACTAAACCGAGGGCGATTGAGGTATTGGATGAAGAAGAAGTCCACATTCCGAAAAGCCAG
GTCGTAAACGTTCCGGTCATCGGGAAAGTGACGGCGGGTATTCCGATTACGGCTGTTGAAAATATCGACGAGTATTTTCC
GCTTCCTGACCGGATGGTTCCTCCGGGCGAACATGTCTTTATGTTAGAAATCATGGGAGAAAGTATGATCGACGCCGGTA
TTTTTGACAAAGATTACGTCATTGTCAAACAGCAGAACACGGCCAATAACGGAGAAATCGTCGTAGCTATGACCGAAGAT
GATGAAGCGACGGTCAAGCGCTTCTATAAAGAAGACAATTATGTGCGGCTGCAGCCGGAAAATCCGACGATGGAGCCGAT
TATCCTGCAAAACGTAAGCATTTTGGGGAAAGTTATCGGCGTATTCAGAGCCGTACATTAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(85-199)

LexA DNA binding domain (LexA_DNA_bind)

(1-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

92.718

100

0.927