Detailed information NTG0554253

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: LXM91_RS08075
• Genome accession: NZ_CP090477
• Coordinates: 1586151..1587140 (+)
• Length: 329 a.a.
• NCBI ID: WP_003154301.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain W0101
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1581151..1592140

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LXM91_RS08060 (LXM91_08060)	acpP	1581348..1581581 (+)	234	WP_003154310.1	acyl carrier protein	-
LXM91_RS08065 (LXM91_08065)	rncS	1581720..1582469 (+)	750	WP_007409760.1	ribonuclease III	-
LXM91_RS08070 (LXM91_08070)	smc	1582571..1586131 (+)	3561	WP_039251523.1	chromosome segregation protein SMC	-
LXM91_RS08075 (LXM91_08075)	pilA	1586151..1587140 (+)	990	WP_003154301.1	signal recognition particle-docking protein FtsY	Machinery gene
LXM91_RS08080 (LXM91_08080)	-	1587224..1587994 (+)	771	WP_033574578.1	aminoglycoside phosphotransferase family protein	-
LXM91_RS08085 (LXM91_08085)	-	1588116..1588448 (+)	333	WP_003154299.1	putative DNA-binding protein	-
LXM91_RS08090 (LXM91_08090)	ffh	1588462..1589802 (+)	1341	WP_014417759.1	signal recognition particle protein	-
LXM91_RS08095 (LXM91_08095)	rpsP	1589908..1590180 (+)	273	WP_003154296.1	30S ribosomal protein S16	-
LXM91_RS08100 (LXM91_08100)	-	1590180..1590425 (+)	246	WP_015417460.1	KH domain-containing protein	-
LXM91_RS08105 (LXM91_08105)	-	1590516..1590902 (+)	387	WP_039251520.1	YlqD family protein	-
LXM91_RS08110 (LXM91_08110)	rimM	1590907..1591431 (+)	525	WP_039251519.1	ribosome maturation factor RimM	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 36096.28 Da
• Isoelectric Point: 5.0098

>NTDB_id=554253 LXM91_RS08075 WP_003154301.1 1586151..1587140(+) (pilA) [Bacillus amyloliquefaciens strain W0101]
MSFFKKLKEKITKQTDSVSEKFKDGLEKTRNSFSNKVNELVSRYRKVDEDFFEELEEVLIGADVGFTTVMELIDELKKEV
KLKNIQDPQEVQSVISEKLVDIYNSGDEQISELNIQDGRLNVILLVGVNGVGKTTTIGKLAHKLKNEGKSVVLAAGDTFR
AGAIEQLEVWGERTGVPVIKQAAGSDPAAVIYDAVHAAKARGADVLICDTAGRLQNKVNLMKELEKVKRVIEREVPEAPH
EVLLALDATTGQNAMAQAKEFSKATNVTGIALTKLDGTAKGGIVLAIRNELHIPVKLVGLGEKVDDLQRFDAESYVYGLF
SDLVEKAED

Nucleotide

• Length: 990 bp

>NTDB_id=554253 LXM91_RS08075 WP_003154301.1 1586151..1587140(+) (pilA) [Bacillus amyloliquefaciens strain W0101]
ATGAGCTTTTTTAAAAAATTAAAAGAGAAAATCACGAAACAGACAGACTCCGTCTCTGAAAAATTTAAAGATGGTCTTGA
AAAAACAAGAAATTCCTTCTCAAATAAAGTGAACGAACTTGTCTCCCGCTACCGGAAAGTCGACGAGGATTTCTTCGAGG
AGCTTGAGGAAGTGCTGATTGGCGCTGACGTAGGTTTTACAACCGTTATGGAGCTGATTGATGAGCTCAAAAAAGAAGTG
AAGCTGAAAAACATCCAGGATCCTCAGGAAGTGCAGTCCGTCATTTCTGAAAAGCTTGTCGACATTTATAACAGCGGCGA
CGAACAGATTTCTGAATTAAATATTCAGGACGGGCGCCTGAACGTTATTCTGCTTGTCGGGGTAAACGGCGTCGGAAAAA
CGACAACGATCGGAAAACTTGCCCATAAGCTGAAGAATGAAGGCAAATCCGTTGTGCTCGCTGCCGGAGACACCTTCAGA
GCCGGGGCGATTGAACAGCTTGAAGTGTGGGGGGAGCGTACAGGCGTGCCTGTCATTAAACAGGCTGCCGGAAGCGACCC
TGCTGCGGTTATTTATGATGCCGTACACGCGGCTAAAGCAAGAGGAGCGGATGTGCTGATTTGTGATACGGCCGGCCGCC
TTCAGAATAAAGTAAACTTAATGAAAGAGCTTGAAAAAGTCAAACGCGTCATCGAACGCGAAGTGCCTGAGGCTCCGCAT
GAGGTTCTCCTTGCGCTGGACGCGACGACAGGCCAAAATGCGATGGCGCAGGCGAAAGAATTCTCCAAAGCGACGAATGT
GACGGGTATCGCGTTAACGAAGCTTGACGGCACCGCTAAAGGCGGTATCGTCCTGGCGATCCGCAATGAGCTTCACATCC
CCGTGAAACTGGTCGGCCTCGGAGAAAAGGTTGACGATCTCCAGCGGTTTGATGCAGAATCTTACGTATACGGTCTCTTT
TCTGATTTAGTTGAAAAAGCCGAGGATTAA

Domains

Predicted by InterProScan.

• SRP54-type protein, GTPase domain (SRP54) (121-320)

• SRP54-type protein, helical bundle domain (SRP54_N) (33-99)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	45.333	91.185	0.413