Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   J6600_RS12880 Genome accession   NZ_CP072563
Coordinates   2670502..2671254 (-) Length   250 a.a.
NCBI ID   WP_095284152.1    Uniprot ID   -
Organism   Bacillus sp. LJBV19     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2665502..2676254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6600_RS12855 (J6600_12855) mreC 2665938..2666801 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  J6600_RS12860 (J6600_12860) mreB 2666832..2667845 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  J6600_RS12865 (J6600_12865) radC 2667937..2668632 (-) 696 WP_007408165.1 DNA repair protein RadC -
  J6600_RS12870 (J6600_12870) - 2668664..2669233 (-) 570 WP_012118105.1 Maf family protein -
  J6600_RS12875 (J6600_12875) - 2669374..2670375 (-) 1002 WP_209387474.1 SPOR domain-containing protein -
  J6600_RS12880 (J6600_12880) comC 2670502..2671254 (-) 753 WP_095284152.1 A24 family peptidase Machinery gene
  J6600_RS12885 (J6600_12885) - 2671394..2672686 (-) 1293 WP_014418549.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  J6600_RS12890 (J6600_12890) - 2672745..2675387 (-) 2643 WP_014418550.1 valine--tRNA ligase -
  J6600_RS12895 (J6600_12895) - 2675840..2676031 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27251.92 Da        Isoelectric Point: 9.4293

>NTDB_id=554249 J6600_RS12880 WP_095284152.1 2670502..2671254(-) (comC) [Bacillus sp. LJBV19]
MLLFLFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGTVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=554249 J6600_RS12880 WP_095284152.1 2670502..2671254(-) (comC) [Bacillus sp. LJBV19]
GTGCTTTTGTTTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAACTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCAGCAGGCATTCATTTCGGTTTCTCGAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACCGTGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATTGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAACCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.468

99.2

0.58